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CLPTM1L (CLPTM1-like)

Identity

Alias_namesCLPTM1-like
Alias_symbol (synonym)FLJ14400
CRR9
Other alias
HGNC (Hugo) CLPTM1L
LocusID (NCBI) 81037
Atlas_Id 40152
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 1317859 and ends at 1345185 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BZW1 (2q33.1) / CLPTM1L (5p15.33)CHST11 (12q23.3) / CLPTM1L (5p15.33)CLPTM1L (5p15.33) / ARFGEF2 (20q13.13)
CLPTM1L (5p15.33) / CDHR2 (5q35.2)CLPTM1L (5p15.33) / PDCD6 (5p15.33)CLPTM1L (5p15.33) / PVT1 (8q24.21)
CLPTM1L (5p15.33) / SLC25A43 (Xq24)CLPTM1L (5p15.33) / TEAD1 (11p15.3)LPCAT1 (5p15.33) / CLPTM1L (5p15.33)
CLPTM1L 5p15.33 / ARFGEF2 20q13.13CLPTM1L 5p15.33 / CDHR2 5q35.2CLPTM1L 5p15.33 / PDCD6 5p15.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLPTM1L   24308
Cards
Entrez_Gene (NCBI)CLPTM1L  81037  CLPTM1-like
AliasesCRR9
GeneCards (Weizmann)CLPTM1L
Ensembl hg19 (Hinxton)ENSG00000049656 [Gene_View]  chr5:1317859-1345185 [Contig_View]  CLPTM1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000049656 [Gene_View]  chr5:1317859-1345185 [Contig_View]  CLPTM1L [Vega]
ICGC DataPortalENSG00000049656
TCGA cBioPortalCLPTM1L
AceView (NCBI)CLPTM1L
Genatlas (Paris)CLPTM1L
WikiGenes81037
SOURCE (Princeton)CLPTM1L
Genetics Home Reference (NIH)CLPTM1L
Genomic and cartography
GoldenPath hg19 (UCSC)CLPTM1L  -     chr5:1317859-1345185 -  5p15.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLPTM1L  -     5p15.33   [Description]    (hg38-Dec_2013)
EnsemblCLPTM1L - 5p15.33 [CytoView hg19]  CLPTM1L - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBICLPTM1L [Mapview hg19]  CLPTM1L [Mapview hg38]
OMIM612585   
Gene and transcription
Genbank (Entrez)AB045223 AK027306 AK057095 AK126225 AK128462
RefSeq transcript (Entrez)NM_030782
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NT_187547 NW_004929321
Consensus coding sequences : CCDS (NCBI)CLPTM1L
Cluster EST : UnigeneHs.444673 [ NCBI ]
CGAP (NCI)Hs.444673
Alternative Splicing GalleryENSG00000049656
Gene ExpressionCLPTM1L [ NCBI-GEO ]   CLPTM1L [ EBI - ARRAY_EXPRESS ]   CLPTM1L [ SEEK ]   CLPTM1L [ MEM ]
Gene Expression Viewer (FireBrowse)CLPTM1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81037
GTEX Portal (Tissue expression)CLPTM1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KA5
Splice isoforms : SwissVarQ96KA5
PhosPhoSitePlusQ96KA5
Domains : Interpro (EBI)CLPTM1    CLPTM1L   
Domain families : Pfam (Sanger)CLPTM1 (PF05602)   
Domain families : Pfam (NCBI)pfam05602   
Conserved Domain (NCBI)CLPTM1L
DMDM Disease mutations81037
Blocks (Seattle)CLPTM1L
SuperfamilyQ96KA5
Human Protein AtlasENSG00000049656
Peptide AtlasQ96KA5
HPRD07480
IPIIPI00151358   IPI00186429   
Protein Interaction databases
DIP (DOE-UCLA)Q96KA5
IntAct (EBI)Q96KA5
FunCoupENSG00000049656
BioGRIDCLPTM1L
STRING (EMBL)CLPTM1L
ZODIACCLPTM1L
Ontologies - Pathways
QuickGOQ96KA5
Ontology : AmiGOapoptotic process  membrane  integral component of membrane  
Ontology : EGO-EBIapoptotic process  membrane  integral component of membrane  
NDEx NetworkCLPTM1L
Atlas of Cancer Signalling NetworkCLPTM1L
Wikipedia pathwaysCLPTM1L
Orthology - Evolution
OrthoDB81037
GeneTree (enSembl)ENSG00000049656
Phylogenetic Trees/Animal Genes : TreeFamCLPTM1L
HOVERGENQ96KA5
HOGENOMQ96KA5
Homologs : HomoloGeneCLPTM1L
Homology/Alignments : Family Browser (UCSC)CLPTM1L
Gene fusions - Rearrangements
Fusion : MitelmanCLPTM1L/ARFGEF2 [5p15.33/20q13.13]  
Fusion : MitelmanCLPTM1L/CDHR2 [5p15.33/5q35.2]  [t(5;5)(p15;q35)]  
Fusion : MitelmanCLPTM1L/PDCD6 [5p15.33/5p15.33]  [t(5;5)(p15;p15)]  
Fusion : MitelmanCLPTM1L/PVT1 [5p15.33/8q24.21]  [t(5;8)(p15;q24)]  
Fusion : MitelmanCLPTM1L/TEAD1 [5p15.33/11p15.3]  [t(5;11)(p15;p15)]  
Fusion : MitelmanLPCAT1/CLPTM1L [5p15.33/5p15.33]  [t(5;5)(p15;p15)]  
Fusion: TCGACLPTM1L 5p15.33 ARFGEF2 20q13.13 HNSC
Fusion: TCGACLPTM1L 5p15.33 CDHR2 5q35.2 KIRC
Fusion: TCGACLPTM1L 5p15.33 PDCD6 5p15.33 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLPTM1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLPTM1L
dbVarCLPTM1L
ClinVarCLPTM1L
1000_GenomesCLPTM1L 
Exome Variant ServerCLPTM1L
ExAC (Exome Aggregation Consortium)CLPTM1L (select the gene name)
Genetic variants : HAPMAP81037
Genomic Variants (DGV)CLPTM1L [DGVbeta]
DECIPHER (Syndromes)5:1317859-1345185  ENSG00000049656
CONAN: Copy Number AnalysisCLPTM1L 
Mutations
ICGC Data PortalCLPTM1L 
TCGA Data PortalCLPTM1L 
Broad Tumor PortalCLPTM1L
OASIS PortalCLPTM1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLPTM1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLPTM1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLPTM1L
DgiDB (Drug Gene Interaction Database)CLPTM1L
DoCM (Curated mutations)CLPTM1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLPTM1L (select a term)
intoGenCLPTM1L
Cancer3DCLPTM1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612585   
Orphanet
MedgenCLPTM1L
Genetic Testing Registry CLPTM1L
NextProtQ96KA5 [Medical]
TSGene81037
GENETestsCLPTM1L
Huge Navigator CLPTM1L [HugePedia]
snp3D : Map Gene to Disease81037
BioCentury BCIQCLPTM1L
ClinGenCLPTM1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81037
Chemical/Pharm GKB GenePA147358156
Clinical trialCLPTM1L
Miscellaneous
canSAR (ICR)CLPTM1L (select the gene name)
Probes
Litterature
PubMed85 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLPTM1L
EVEXCLPTM1L
GoPubMedCLPTM1L
iHOPCLPTM1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:55 CEST 2017

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