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CLPTM1L (CLPTM1 like)

Identity

Alias (NCBI)CRR9
HGNC (Hugo) CLPTM1L
HGNC Alias symbFLJ14400
CRR9
HGNC Alias namecisplatin resistance related protein
HGNC Previous nameCLPTM1-like
LocusID (NCBI) 81037
Atlas_Id 40152
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 1317752 and ends at 1345099 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BZW1 (2q33.1) / CLPTM1L (5p15.33)CHST11 (12q23.3) / CLPTM1L (5p15.33)CLPTM1L (5p15.33) / ARFGEF2 (20q13.13)
CLPTM1L (5p15.33) / CDHR2 (5q35.2)CLPTM1L (5p15.33) / PDCD6 (5p15.33)CLPTM1L (5p15.33) / PVT1 (8q24.21)
CLPTM1L (5p15.33) / SLC25A43 (Xq24)CLPTM1L (5p15.33) / TEAD1 (11p15.3)LPCAT1 (5p15.33) / CLPTM1L (5p15.33)
CLPTM1L 5p15.33 / ARFGEF2 20q13.13CLPTM1L 5p15.33 / CDHR2 5q35.2CLPTM1L 5p15.33 / PDCD6 5p15.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CLPTM1L   24308
Cards
Entrez_Gene (NCBI)CLPTM1L    CLPTM1 like
AliasesCRR9
GeneCards (Weizmann)CLPTM1L
Ensembl hg19 (Hinxton)ENSG00000049656 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000049656 [Gene_View]  ENSG00000049656 [Sequence]  chr5:1317752-1345099 [Contig_View]  CLPTM1L [Vega]
ICGC DataPortalENSG00000049656
TCGA cBioPortalCLPTM1L
AceView (NCBI)CLPTM1L
Genatlas (Paris)CLPTM1L
SOURCE (Princeton)CLPTM1L
Genetics Home Reference (NIH)CLPTM1L
Genomic and cartography
GoldenPath hg38 (UCSC)CLPTM1L  -     chr5:1317752-1345099 -  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLPTM1L  -     5p15.33   [Description]    (hg19-Feb_2009)
GoldenPathCLPTM1L - 5p15.33 [CytoView hg19]  CLPTM1L - 5p15.33 [CytoView hg38]
ImmunoBaseENSG00000049656
Genome Data Viewer NCBICLPTM1L [Mapview hg19]  
OMIM612585   
Gene and transcription
Genbank (Entrez)AB045223 AK027306 AK057095 AK126225 AK128462
RefSeq transcript (Entrez)NM_030782
Consensus coding sequences : CCDS (NCBI)CLPTM1L
Gene ExpressionCLPTM1L [ NCBI-GEO ]   CLPTM1L [ EBI - ARRAY_EXPRESS ]   CLPTM1L [ SEEK ]   CLPTM1L [ MEM ]
Gene Expression Viewer (FireBrowse)CLPTM1L [ Firebrowse - Broad ]
GenevisibleExpression of CLPTM1L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81037
GTEX Portal (Tissue expression)CLPTM1L
Human Protein AtlasENSG00000049656-CLPTM1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KA5
PhosPhoSitePlusQ96KA5
Domains : Interpro (EBI)CLPTM1    CLPTM1L   
Domain families : Pfam (Sanger)CLPTM1 (PF05602)   
Domain families : Pfam (NCBI)pfam05602   
Conserved Domain (NCBI)CLPTM1L
SuperfamilyQ96KA5
AlphaFold pdb e-kbQ96KA5   
Human Protein Atlas [tissue]ENSG00000049656-CLPTM1L [tissue]
HPRD07480
Protein Interaction databases
DIP (DOE-UCLA)Q96KA5
IntAct (EBI)Q96KA5
BioGRIDCLPTM1L
STRING (EMBL)CLPTM1L
ZODIACCLPTM1L
Ontologies - Pathways
QuickGOQ96KA5
Ontology : AmiGOprotein binding  apoptotic process  endomembrane system  membrane  membrane  integral component of membrane  
Ontology : EGO-EBIprotein binding  apoptotic process  endomembrane system  membrane  membrane  integral component of membrane  
NDEx NetworkCLPTM1L
Atlas of Cancer Signalling NetworkCLPTM1L
Wikipedia pathwaysCLPTM1L
Orthology - Evolution
OrthoDB81037
GeneTree (enSembl)ENSG00000049656
Phylogenetic Trees/Animal Genes : TreeFamCLPTM1L
Homologs : HomoloGeneCLPTM1L
Homology/Alignments : Family Browser (UCSC)CLPTM1L
Gene fusions - Rearrangements
Fusion : MitelmanCLPTM1L/ARFGEF2 [5p15.33/20q13.13]  
Fusion : MitelmanCLPTM1L/CDHR2 [5p15.33/5q35.2]  
Fusion : MitelmanCLPTM1L/PDCD6 [5p15.33/5p15.33]  
Fusion : MitelmanCLPTM1L/PVT1 [5p15.33/8q24.21]  
Fusion : MitelmanCLPTM1L/TEAD1 [5p15.33/11p15.3]  
Fusion : MitelmanLPCAT1/CLPTM1L [5p15.33/5p15.33]  
Fusion : QuiverCLPTM1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLPTM1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLPTM1L
dbVarCLPTM1L
ClinVarCLPTM1L
MonarchCLPTM1L
1000_GenomesCLPTM1L 
Exome Variant ServerCLPTM1L
GNOMAD BrowserENSG00000049656
Varsome BrowserCLPTM1L
ACMGCLPTM1L variants
VarityQ96KA5
Genomic Variants (DGV)CLPTM1L [DGVbeta]
DECIPHERCLPTM1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLPTM1L 
Mutations
ICGC Data PortalCLPTM1L 
TCGA Data PortalCLPTM1L 
Broad Tumor PortalCLPTM1L
OASIS PortalCLPTM1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLPTM1L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCLPTM1L
Mutations and Diseases : HGMDCLPTM1L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCLPTM1L
DgiDB (Drug Gene Interaction Database)CLPTM1L
DoCM (Curated mutations)CLPTM1L
CIViC (Clinical Interpretations of Variants in Cancer)CLPTM1L
Cancer3DCLPTM1L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612585   
Orphanet
DisGeNETCLPTM1L
MedgenCLPTM1L
Genetic Testing Registry CLPTM1L
NextProtQ96KA5 [Medical]
GENETestsCLPTM1L
Target ValidationCLPTM1L
Huge Navigator CLPTM1L [HugePedia]
ClinGenCLPTM1L
Clinical trials, drugs, therapy
MyCancerGenomeCLPTM1L
Protein Interactions : CTDCLPTM1L
Pharm GKB GenePA147358156
PharosQ96KA5
Clinical trialCLPTM1L
Miscellaneous
canSAR (ICR)CLPTM1L
HarmonizomeCLPTM1L
DataMed IndexCLPTM1L
Probes
Litterature
PubMed118 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCLPTM1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:04:25 CEST 2021

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