Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CLRN1-AS1 (CLRN1 antisense RNA 1)

Identity

Alias_namesCLRN1OS
clarin 1 opposite strand
CLRN1 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)UCRP
Other alias
HGNC (Hugo) CLRN1-AS1
LocusID (NCBI) 116933
Atlas_Id 61904
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 150972678 and ends at 151080726 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLRN1-AS1 (3q25.1) / GRIP2 (3p25.1)ZNF3 (7q22.1) / CLRN1-AS1 (3q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLRN1-AS1   30895
Cards
Entrez_Gene (NCBI)CLRN1-AS1  116933  CLRN1 antisense RNA 1
AliasesCLRN1OS; UCRP
GeneCards (Weizmann)CLRN1-AS1
Ensembl hg19 (Hinxton)ENSG00000239265 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239265 [Gene_View]  chr3:150972678-151080726 [Contig_View]  CLRN1-AS1 [Vega]
ICGC DataPortalENSG00000239265
TCGA cBioPortalCLRN1-AS1
AceView (NCBI)CLRN1-AS1
Genatlas (Paris)CLRN1-AS1
WikiGenes116933
SOURCE (Princeton)CLRN1-AS1
Genetics Home Reference (NIH)CLRN1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)CLRN1-AS1  -     chr3:150972678-151080726 +  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLRN1-AS1  -     3q25.1   [Description]    (hg19-Feb_2009)
EnsemblCLRN1-AS1 - 3q25.1 [CytoView hg19]  CLRN1-AS1 - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBICLRN1-AS1 [Mapview hg19]  CLRN1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF388367 AK126442
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLRN1-AS1
Cluster EST : UnigeneHs.570680 [ NCBI ]
CGAP (NCI)Hs.570680
Alternative Splicing GalleryENSG00000239265
Gene ExpressionCLRN1-AS1 [ NCBI-GEO ]   CLRN1-AS1 [ EBI - ARRAY_EXPRESS ]   CLRN1-AS1 [ SEEK ]   CLRN1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CLRN1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)116933
GTEX Portal (Tissue expression)CLRN1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CLRN1-AS1
DMDM Disease mutations116933
Blocks (Seattle)CLRN1-AS1
Human Protein AtlasENSG00000239265
Protein Interaction databases
FunCoupENSG00000239265
BioGRIDCLRN1-AS1
STRING (EMBL)CLRN1-AS1
ZODIACCLRN1-AS1
Ontologies - Pathways
Huge Navigator CLRN1-AS1 [HugePedia]
snp3D : Map Gene to Disease116933
BioCentury BCIQCLRN1-AS1
ClinGenCLRN1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116933
Clinical trialCLRN1-AS1
Miscellaneous
canSAR (ICR)CLRN1-AS1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLRN1-AS1
EVEXCLRN1-AS1
GoPubMedCLRN1-AS1
iHOPCLRN1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:56 CEST 2017

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