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CLRN2 (clarin 2)

Identity

Other alias-
HGNC (Hugo) CLRN2
LocusID (NCBI) 645104
Atlas_Id 61905
Location 4p15.32  [Link to chromosome band 4p15]
Location_base_pair Starts at 17515165 and ends at 17527104 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLRN2   33939
Cards
Entrez_Gene (NCBI)CLRN2  645104  clarin 2
Aliases
GeneCards (Weizmann)CLRN2
Ensembl hg19 (Hinxton)ENSG00000249581 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249581 [Gene_View]  chr4:17515165-17527104 [Contig_View]  CLRN2 [Vega]
ICGC DataPortalENSG00000249581
TCGA cBioPortalCLRN2
AceView (NCBI)CLRN2
Genatlas (Paris)CLRN2
WikiGenes645104
SOURCE (Princeton)CLRN2
Genetics Home Reference (NIH)CLRN2
Genomic and cartography
GoldenPath hg38 (UCSC)CLRN2  -     chr4:17515165-17527104 +  4p15.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLRN2  -     4p15.32   [Description]    (hg19-Feb_2009)
EnsemblCLRN2 - 4p15.32 [CytoView hg19]  CLRN2 - 4p15.32 [CytoView hg38]
Mapping of homologs : NCBICLRN2 [Mapview hg19]  CLRN2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC127863
RefSeq transcript (Entrez)NM_001079827
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLRN2
Cluster EST : UnigeneHs.631526 [ NCBI ]
CGAP (NCI)Hs.631526
Alternative Splicing GalleryENSG00000249581
Gene ExpressionCLRN2 [ NCBI-GEO ]   CLRN2 [ EBI - ARRAY_EXPRESS ]   CLRN2 [ SEEK ]   CLRN2 [ MEM ]
Gene Expression Viewer (FireBrowse)CLRN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645104
GTEX Portal (Tissue expression)CLRN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PK11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PK11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PK11
Splice isoforms : SwissVarA0PK11
PhosPhoSitePlusA0PK11
Domains : Interpro (EBI)Clarin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CLRN2
DMDM Disease mutations645104
Blocks (Seattle)CLRN2
SuperfamilyA0PK11
Human Protein AtlasENSG00000249581
Peptide AtlasA0PK11
IPIIPI00415041   
Protein Interaction databases
DIP (DOE-UCLA)A0PK11
IntAct (EBI)A0PK11
FunCoupENSG00000249581
BioGRIDCLRN2
STRING (EMBL)CLRN2
ZODIACCLRN2
Ontologies - Pathways
QuickGOA0PK11
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCLRN2
Atlas of Cancer Signalling NetworkCLRN2
Wikipedia pathwaysCLRN2
Orthology - Evolution
OrthoDB645104
GeneTree (enSembl)ENSG00000249581
Phylogenetic Trees/Animal Genes : TreeFamCLRN2
HOVERGENA0PK11
HOGENOMA0PK11
Homologs : HomoloGeneCLRN2
Homology/Alignments : Family Browser (UCSC)CLRN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLRN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLRN2
dbVarCLRN2
ClinVarCLRN2
1000_GenomesCLRN2 
Exome Variant ServerCLRN2
ExAC (Exome Aggregation Consortium)CLRN2 (select the gene name)
Genetic variants : HAPMAP645104
Genomic Variants (DGV)CLRN2 [DGVbeta]
DECIPHERCLRN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLRN2 
Mutations
ICGC Data PortalCLRN2 
TCGA Data PortalCLRN2 
Broad Tumor PortalCLRN2
OASIS PortalCLRN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLRN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLRN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLRN2
DgiDB (Drug Gene Interaction Database)CLRN2
DoCM (Curated mutations)CLRN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLRN2 (select a term)
intoGenCLRN2
Cancer3DCLRN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLRN2
Genetic Testing Registry CLRN2
NextProtA0PK11 [Medical]
TSGene645104
GENETestsCLRN2
Huge Navigator CLRN2 [HugePedia]
snp3D : Map Gene to Disease645104
BioCentury BCIQCLRN2
ClinGenCLRN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645104
Chemical/Pharm GKB GenePA162382499
Clinical trialCLRN2
Miscellaneous
canSAR (ICR)CLRN2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLRN2
EVEXCLRN2
GoPubMedCLRN2
iHOPCLRN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:06:14 CEST 2017

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