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CLRN3 (clarin 3)

Identity

Alias_namesTMEM12
transmembrane protein 12
Alias_symbol (synonym)MGC32871
USH3AL1
Other alias
HGNC (Hugo) CLRN3
LocusID (NCBI) 119467
Atlas_Id 61906
Location 10q26.2  [Link to chromosome band 10q26]
Location_base_pair Starts at 127877841 and ends at 127892947 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLRN3 (10q26.2) / SP1 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLRN3   20795
Cards
Entrez_Gene (NCBI)CLRN3  10946  clarin 3
AliasesTMEM12; USH3AL1
GeneCards (Weizmann)CLRN3
Ensembl hg19 (Hinxton)ENSG00000180745 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180745 [Gene_View]  chr10:127877841-127892947 [Contig_View]  CLRN3 [Vega]
ICGC DataPortalENSG00000180745
TCGA cBioPortalCLRN3
AceView (NCBI)CLRN3
Genatlas (Paris)CLRN3
WikiGenes119467
SOURCE (Princeton)CLRN3
Genetics Home Reference (NIH)CLRN3
Genomic and cartography
GoldenPath hg38 (UCSC)CLRN3  -     chr10:127877841-127892947 -  10q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLRN3  -     10q26.2   [Description]    (hg19-Feb_2009)
EnsemblCLRN3 - 10q26.2 [CytoView hg19]  CLRN3 - 10q26.2 [CytoView hg38]
Mapping of homologs : NCBICLRN3 [Mapview hg19]  CLRN3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI289873 BC029478 BM830163 BX640823 HQ447781
RefSeq transcript (Entrez)NM_152311
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLRN3
Cluster EST : UnigeneHs.242014 [ NCBI ]
CGAP (NCI)Hs.242014
Alternative Splicing GalleryENSG00000180745
Gene ExpressionCLRN3 [ NCBI-GEO ]   CLRN3 [ EBI - ARRAY_EXPRESS ]   CLRN3 [ SEEK ]   CLRN3 [ MEM ]
Gene Expression Viewer (FireBrowse)CLRN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119467
GTEX Portal (Tissue expression)CLRN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCR9
Splice isoforms : SwissVarQ8NCR9
PhosPhoSitePlusQ8NCR9
Domains : Interpro (EBI)Clarin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CLRN3
DMDM Disease mutations119467
Blocks (Seattle)CLRN3
SuperfamilyQ8NCR9
Human Protein AtlasENSG00000180745
Peptide AtlasQ8NCR9
HPRD14553
IPIIPI00168435   IPI00828019   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCR9
IntAct (EBI)Q8NCR9
FunCoupENSG00000180745
BioGRIDCLRN3
STRING (EMBL)CLRN3
ZODIACCLRN3
Ontologies - Pathways
QuickGOQ8NCR9
Ontology : AmiGOintegral component of membrane  extracellular exosome  
Ontology : EGO-EBIintegral component of membrane  extracellular exosome  
NDEx NetworkCLRN3
Atlas of Cancer Signalling NetworkCLRN3
Wikipedia pathwaysCLRN3
Orthology - Evolution
OrthoDB119467
GeneTree (enSembl)ENSG00000180745
Phylogenetic Trees/Animal Genes : TreeFamCLRN3
HOVERGENQ8NCR9
HOGENOMQ8NCR9
Homologs : HomoloGeneCLRN3
Homology/Alignments : Family Browser (UCSC)CLRN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLRN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLRN3
dbVarCLRN3
ClinVarCLRN3
1000_GenomesCLRN3 
Exome Variant ServerCLRN3
ExAC (Exome Aggregation Consortium)CLRN3 (select the gene name)
Genetic variants : HAPMAP119467
Genomic Variants (DGV)CLRN3 [DGVbeta]
DECIPHERCLRN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLRN3 
Mutations
ICGC Data PortalCLRN3 
TCGA Data PortalCLRN3 
Broad Tumor PortalCLRN3
OASIS PortalCLRN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLRN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLRN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLRN3
DgiDB (Drug Gene Interaction Database)CLRN3
DoCM (Curated mutations)CLRN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLRN3 (select a term)
intoGenCLRN3
Cancer3DCLRN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLRN3
Genetic Testing Registry CLRN3
NextProtQ8NCR9 [Medical]
TSGene119467
GENETestsCLRN3
Target ValidationCLRN3
Huge Navigator CLRN3 [HugePedia]
snp3D : Map Gene to Disease119467
BioCentury BCIQCLRN3
ClinGenCLRN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119467
Chemical/Pharm GKB GenePA162382510
Clinical trialCLRN3
Miscellaneous
canSAR (ICR)CLRN3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLRN3
EVEXCLRN3
GoPubMedCLRN3
iHOPCLRN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:04:59 CEST 2017

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