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CLRN3 (clarin 3)

Identity

Alias (NCBI)TMEM12
USH3AL1
HGNC (Hugo) CLRN3
HGNC Alias symbMGC32871
USH3AL1
HGNC Previous nameTMEM12
HGNC Previous nametransmembrane protein 12
LocusID (NCBI) 119467
Atlas_Id 61906
Location 10q26.2  [Link to chromosome band 10q26]
Location_base_pair Starts at 127877841 and ends at 127892941 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLRN3 (10q26.2) / SP1 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CLRN3   20795
Cards
Entrez_Gene (NCBI)CLRN3    clarin 3
AliasesTMEM12; USH3AL1
GeneCards (Weizmann)CLRN3
Ensembl hg19 (Hinxton)ENSG00000180745 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180745 [Gene_View]  ENSG00000180745 [Sequence]  chr10:127877841-127892941 [Contig_View]  CLRN3 [Vega]
ICGC DataPortalENSG00000180745
TCGA cBioPortalCLRN3
AceView (NCBI)CLRN3
Genatlas (Paris)CLRN3
SOURCE (Princeton)CLRN3
Genetics Home Reference (NIH)CLRN3
Genomic and cartography
GoldenPath hg38 (UCSC)CLRN3  -     chr10:127877841-127892941 -  10q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLRN3  -     10q26.2   [Description]    (hg19-Feb_2009)
GoldenPathCLRN3 - 10q26.2 [CytoView hg19]  CLRN3 - 10q26.2 [CytoView hg38]
ImmunoBaseENSG00000180745
Genome Data Viewer NCBICLRN3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI289873 BC029478 BM830163 BX640823
RefSeq transcript (Entrez)NM_152311
Consensus coding sequences : CCDS (NCBI)CLRN3
Gene ExpressionCLRN3 [ NCBI-GEO ]   CLRN3 [ EBI - ARRAY_EXPRESS ]   CLRN3 [ SEEK ]   CLRN3 [ MEM ]
Gene Expression Viewer (FireBrowse)CLRN3 [ Firebrowse - Broad ]
GenevisibleExpression of CLRN3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119467
GTEX Portal (Tissue expression)CLRN3
Human Protein AtlasENSG00000180745-CLRN3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCR9
PhosPhoSitePlusQ8NCR9
Domains : Interpro (EBI)Clarin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CLRN3
SuperfamilyQ8NCR9
AlphaFold pdb e-kbQ8NCR9   
Human Protein Atlas [tissue]ENSG00000180745-CLRN3 [tissue]
HPRD14553
Protein Interaction databases
DIP (DOE-UCLA)Q8NCR9
IntAct (EBI)Q8NCR9
BioGRIDCLRN3
STRING (EMBL)CLRN3
ZODIACCLRN3
Ontologies - Pathways
QuickGOQ8NCR9
Ontology : AmiGOprotein binding  integral component of membrane  extracellular exosome  
Ontology : EGO-EBIprotein binding  integral component of membrane  extracellular exosome  
NDEx NetworkCLRN3
Atlas of Cancer Signalling NetworkCLRN3
Wikipedia pathwaysCLRN3
Orthology - Evolution
OrthoDB119467
GeneTree (enSembl)ENSG00000180745
Phylogenetic Trees/Animal Genes : TreeFamCLRN3
Homologs : HomoloGeneCLRN3
Homology/Alignments : Family Browser (UCSC)CLRN3
Gene fusions - Rearrangements
Fusion : QuiverCLRN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLRN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLRN3
dbVarCLRN3
ClinVarCLRN3
MonarchCLRN3
1000_GenomesCLRN3 
Exome Variant ServerCLRN3
GNOMAD BrowserENSG00000180745
Varsome BrowserCLRN3
ACMGCLRN3 variants
VarityQ8NCR9
Genomic Variants (DGV)CLRN3 [DGVbeta]
DECIPHERCLRN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLRN3 
Mutations
ICGC Data PortalCLRN3 
TCGA Data PortalCLRN3 
Broad Tumor PortalCLRN3
OASIS PortalCLRN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLRN3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCLRN3
Mutations and Diseases : HGMDCLRN3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCLRN3
DgiDB (Drug Gene Interaction Database)CLRN3
DoCM (Curated mutations)CLRN3
CIViC (Clinical Interpretations of Variants in Cancer)CLRN3
Cancer3DCLRN3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCLRN3
MedgenCLRN3
Genetic Testing Registry CLRN3
NextProtQ8NCR9 [Medical]
GENETestsCLRN3
Target ValidationCLRN3
Huge Navigator CLRN3 [HugePedia]
ClinGenCLRN3
Clinical trials, drugs, therapy
MyCancerGenomeCLRN3
Protein Interactions : CTDCLRN3
Pharm GKB GenePA162382510
PharosQ8NCR9
Clinical trialCLRN3
Miscellaneous
canSAR (ICR)CLRN3
HarmonizomeCLRN3
DataMed IndexCLRN3
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCLRN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:46:19 CEST 2021

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