Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CLSTN1 (calsyntenin 1)

Identity

Alias_symbol (synonym)CSTN1
KIAA0911
CDHR12
Other aliasALC-ALPHA
CST-1
PIK3CD
XB31alpha
alcalpha1
alcalpha2
HGNC (Hugo) CLSTN1
LocusID (NCBI) 22883
Atlas_Id 61907
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 9729021 and ends at 9824526 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AKR1C3 (10p15.1) / CLSTN1 (1p36.22)CLSTN1 (1p36.22) / CLSTN1 (1p36.22)CLSTN1 (1p36.22) / CTNNBIP1 (1p36.22)
CLSTN1 (1p36.22) / MRPL51 (12p13.31)CLSTN1 (1p36.22) / PLEKHG5 (1p36.31)CLSTN1 (1p36.22) / RUSC2 (9p13.3)
CLSTN1 (1p36.22) / SLC7A2 (8p22)CLSTN1 (1p36.22) / TLR7 (Xp22.2)CTNNBIP1 (1p36.22) / CLSTN1 (1p36.22)
DNAH11 (7p15.3) / CLSTN1 (1p36.22)CLSTN1 CTNNBIP1CLSTN1 PLEKHG5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLSTN1   17447
Cards
Entrez_Gene (NCBI)CLSTN1  22883  calsyntenin 1
AliasesALC-ALPHA; CDHR12; CST-1; CSTN1; 
PIK3CD; XB31alpha; alcalpha1; alcalpha2
GeneCards (Weizmann)CLSTN1
Ensembl hg19 (Hinxton)ENSG00000171603 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171603 [Gene_View]  chr1:9729021-9824526 [Contig_View]  CLSTN1 [Vega]
ICGC DataPortalENSG00000171603
TCGA cBioPortalCLSTN1
AceView (NCBI)CLSTN1
Genatlas (Paris)CLSTN1
WikiGenes22883
SOURCE (Princeton)CLSTN1
Genetics Home Reference (NIH)CLSTN1
Genomic and cartography
GoldenPath hg38 (UCSC)CLSTN1  -     chr1:9729021-9824526 -  1p36.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLSTN1  -     1p36.22   [Description]    (hg19-Feb_2009)
EnsemblCLSTN1 - 1p36.22 [CytoView hg19]  CLSTN1 - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBICLSTN1 [Mapview hg19]  CLSTN1 [Mapview hg38]
OMIM611321   
Gene and transcription
Genbank (Entrez)AB020718 AF438482 AK000605 AK001591 AK056820
RefSeq transcript (Entrez)NM_001009566 NM_001302883 NM_014944
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLSTN1
Cluster EST : UnigeneHs.29665 [ NCBI ]
CGAP (NCI)Hs.29665
Alternative Splicing GalleryENSG00000171603
Gene ExpressionCLSTN1 [ NCBI-GEO ]   CLSTN1 [ EBI - ARRAY_EXPRESS ]   CLSTN1 [ SEEK ]   CLSTN1 [ MEM ]
Gene Expression Viewer (FireBrowse)CLSTN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22883
GTEX Portal (Tissue expression)CLSTN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94985   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94985  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94985
Splice isoforms : SwissVarO94985
PhosPhoSitePlusO94985
Domaine pattern : Prosite (Expaxy)CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Calsyntenin    ConA-like_dom   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CLSTN1
DMDM Disease mutations22883
Blocks (Seattle)CLSTN1
SuperfamilyO94985
Human Protein AtlasENSG00000171603
Peptide AtlasO94985
HPRD10837
IPIIPI00413959   IPI00007257   IPI00644294   
Protein Interaction databases
DIP (DOE-UCLA)O94985
IntAct (EBI)O94985
FunCoupENSG00000171603
BioGRIDCLSTN1
STRING (EMBL)CLSTN1
ZODIACCLSTN1
Ontologies - Pathways
QuickGOO94985
Ontology : AmiGOGolgi membrane  beta-amyloid binding  regulation of cell growth  calcium ion binding  protein binding  extracellular space  nucleus  endoplasmic reticulum membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell surface  postsynaptic density  integral component of membrane  kinesin binding  cell junction  X11-like protein binding  cell projection  postsynaptic membrane  positive regulation of synaptic transmission  positive regulation of synapse assembly  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  beta-amyloid binding  regulation of cell growth  calcium ion binding  protein binding  extracellular space  nucleus  endoplasmic reticulum membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell surface  postsynaptic density  integral component of membrane  kinesin binding  cell junction  X11-like protein binding  cell projection  postsynaptic membrane  positive regulation of synaptic transmission  positive regulation of synapse assembly  extracellular exosome  
NDEx NetworkCLSTN1
Atlas of Cancer Signalling NetworkCLSTN1
Wikipedia pathwaysCLSTN1
Orthology - Evolution
OrthoDB22883
GeneTree (enSembl)ENSG00000171603
Phylogenetic Trees/Animal Genes : TreeFamCLSTN1
HOVERGENO94985
HOGENOMO94985
Homologs : HomoloGeneCLSTN1
Homology/Alignments : Family Browser (UCSC)CLSTN1
Gene fusions - Rearrangements
Fusion: TCGACLSTN1 CTNNBIP1
Fusion: TCGACLSTN1 PLEKHG5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLSTN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLSTN1
dbVarCLSTN1
ClinVarCLSTN1
1000_GenomesCLSTN1 
Exome Variant ServerCLSTN1
ExAC (Exome Aggregation Consortium)CLSTN1 (select the gene name)
Genetic variants : HAPMAP22883
Genomic Variants (DGV)CLSTN1 [DGVbeta]
DECIPHERCLSTN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLSTN1 
Mutations
ICGC Data PortalCLSTN1 
TCGA Data PortalCLSTN1 
Broad Tumor PortalCLSTN1
OASIS PortalCLSTN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLSTN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLSTN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLSTN1
DgiDB (Drug Gene Interaction Database)CLSTN1
DoCM (Curated mutations)CLSTN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLSTN1 (select a term)
intoGenCLSTN1
Cancer3DCLSTN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611321   
Orphanet
MedgenCLSTN1
Genetic Testing Registry CLSTN1
NextProtO94985 [Medical]
TSGene22883
GENETestsCLSTN1
Target ValidationCLSTN1
Huge Navigator CLSTN1 [HugePedia]
snp3D : Map Gene to Disease22883
BioCentury BCIQCLSTN1
ClinGenCLSTN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22883
Chemical/Pharm GKB GenePA38238
Clinical trialCLSTN1
Miscellaneous
canSAR (ICR)CLSTN1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLSTN1
EVEXCLSTN1
GoPubMedCLSTN1
iHOPCLSTN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:59 CEST 2017

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