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CLSTN1 (calsyntenin 1)

Identity

Alias (NCBI)ALC-ALPHA
CDHR12
CST-1
CSTN1
PIK3CD
XB31alpha
alcalpha1
alcalpha2
HGNC (Hugo) CLSTN1
HGNC Alias symbCSTN1
KIAA0911
CDHR12
HGNC Alias namecadherin-related family member 12
LocusID (NCBI) 22883
Atlas_Id 61907
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 9729021 and ends at 9824526 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AKR1C3 (10p15.1) / CLSTN1 (1p36.22)CLSTN1 (1p36.22) / CLSTN1 (1p36.22)CLSTN1 (1p36.22) / CTNNBIP1 (1p36.22)
CLSTN1 (1p36.22) / MRPL51 (12p13.31)CLSTN1 (1p36.22) / PLEKHG5 (1p36.31)CLSTN1 (1p36.22) / RUSC2 (9p13.3)
CLSTN1 (1p36.22) / SLC7A2 (8p22)CLSTN1 (1p36.22) / TLR7 (Xp22.2)CTNNBIP1 (1p36.22) / CLSTN1 (1p36.22)
DNAH11 (7p15.3) / CLSTN1 (1p36.22)CLSTN1 CTNNBIP1CLSTN1 PLEKHG5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CLSTN1   17447
Cards
Entrez_Gene (NCBI)CLSTN1    calsyntenin 1
AliasesALC-ALPHA; CDHR12; CST-1; CSTN1; 
PIK3CD; XB31alpha; alcalpha1; alcalpha2
GeneCards (Weizmann)CLSTN1
Ensembl hg19 (Hinxton)ENSG00000171603 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171603 [Gene_View]  ENSG00000171603 [Sequence]  chr1:9729021-9824526 [Contig_View]  CLSTN1 [Vega]
ICGC DataPortalENSG00000171603
TCGA cBioPortalCLSTN1
AceView (NCBI)CLSTN1
Genatlas (Paris)CLSTN1
SOURCE (Princeton)CLSTN1
Genetics Home Reference (NIH)CLSTN1
Genomic and cartography
GoldenPath hg38 (UCSC)CLSTN1  -     chr1:9729021-9824526 -  1p36.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLSTN1  -     1p36.22   [Description]    (hg19-Feb_2009)
GoldenPathCLSTN1 - 1p36.22 [CytoView hg19]  CLSTN1 - 1p36.22 [CytoView hg38]
ImmunoBaseENSG00000171603
Genome Data Viewer NCBICLSTN1 [Mapview hg19]  
OMIM611321   
Gene and transcription
Genbank (Entrez)AB020718 AF438482 AK000605 AK001591 AK056820
RefSeq transcript (Entrez)NM_001009566 NM_001302883 NM_014944
Consensus coding sequences : CCDS (NCBI)CLSTN1
Gene ExpressionCLSTN1 [ NCBI-GEO ]   CLSTN1 [ EBI - ARRAY_EXPRESS ]   CLSTN1 [ SEEK ]   CLSTN1 [ MEM ]
Gene Expression Viewer (FireBrowse)CLSTN1 [ Firebrowse - Broad ]
GenevisibleExpression of CLSTN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22883
GTEX Portal (Tissue expression)CLSTN1
Human Protein AtlasENSG00000171603-CLSTN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94985   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94985  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94985
PhosPhoSitePlusO94985
Domaine pattern : Prosite (Expaxy)CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin-like_dom    Cadherin-like_sf    Calsyntenin    ConA-like_dom_sf   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CLSTN1
SuperfamilyO94985
AlphaFold pdb e-kbO94985   
Human Protein Atlas [tissue]ENSG00000171603-CLSTN1 [tissue]
HPRD10837
Protein Interaction databases
DIP (DOE-UCLA)O94985
IntAct (EBI)O94985
BioGRIDCLSTN1
STRING (EMBL)CLSTN1
ZODIACCLSTN1
Ontologies - Pathways
QuickGOO94985
Ontology : AmiGOGolgi membrane  amyloid-beta binding  regulation of cell growth  calcium ion binding  protein binding  extracellular region  nucleus  endoplasmic reticulum membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell surface  kinesin binding  X11-like protein binding  postsynaptic membrane  positive regulation of synaptic transmission  positive regulation of synapse assembly  regulation of synapse maturation  postsynaptic endosome  neurotransmitter receptor transport to postsynaptic membrane  glutamatergic synapse  GABA-ergic synapse  vesicle-mediated transport in synapse  integral component of postsynaptic density membrane  integral component of spine apparatus membrane  
Ontology : EGO-EBIGolgi membrane  amyloid-beta binding  regulation of cell growth  calcium ion binding  protein binding  extracellular region  nucleus  endoplasmic reticulum membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell surface  kinesin binding  X11-like protein binding  postsynaptic membrane  positive regulation of synaptic transmission  positive regulation of synapse assembly  regulation of synapse maturation  postsynaptic endosome  neurotransmitter receptor transport to postsynaptic membrane  glutamatergic synapse  GABA-ergic synapse  vesicle-mediated transport in synapse  integral component of postsynaptic density membrane  integral component of spine apparatus membrane  
NDEx NetworkCLSTN1
Atlas of Cancer Signalling NetworkCLSTN1
Wikipedia pathwaysCLSTN1
Orthology - Evolution
OrthoDB22883
GeneTree (enSembl)ENSG00000171603
Phylogenetic Trees/Animal Genes : TreeFamCLSTN1
Homologs : HomoloGeneCLSTN1
Homology/Alignments : Family Browser (UCSC)CLSTN1
Gene fusions - Rearrangements
Fusion : QuiverCLSTN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLSTN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLSTN1
dbVarCLSTN1
ClinVarCLSTN1
MonarchCLSTN1
1000_GenomesCLSTN1 
Exome Variant ServerCLSTN1
GNOMAD BrowserENSG00000171603
Varsome BrowserCLSTN1
ACMGCLSTN1 variants
VarityO94985
Genomic Variants (DGV)CLSTN1 [DGVbeta]
DECIPHERCLSTN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLSTN1 
Mutations
ICGC Data PortalCLSTN1 
TCGA Data PortalCLSTN1 
Broad Tumor PortalCLSTN1
OASIS PortalCLSTN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLSTN1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCLSTN1
Mutations and Diseases : HGMDCLSTN1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCLSTN1
DgiDB (Drug Gene Interaction Database)CLSTN1
DoCM (Curated mutations)CLSTN1
CIViC (Clinical Interpretations of Variants in Cancer)CLSTN1
Cancer3DCLSTN1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611321   
Orphanet
DisGeNETCLSTN1
MedgenCLSTN1
Genetic Testing Registry CLSTN1
NextProtO94985 [Medical]
GENETestsCLSTN1
Target ValidationCLSTN1
Huge Navigator CLSTN1 [HugePedia]
ClinGenCLSTN1
Clinical trials, drugs, therapy
MyCancerGenomeCLSTN1
Protein Interactions : CTDCLSTN1
Pharm GKB GenePA38238
PharosO94985
Clinical trialCLSTN1
Miscellaneous
canSAR (ICR)CLSTN1
HarmonizomeCLSTN1
DataMed IndexCLSTN1
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCLSTN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:46:19 CEST 2021

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