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CLSTN2 (calsyntenin 2)

Identity

Alias_symbol (synonym)CSTN2
CS2
FLJ39113
CDHR13
Other aliasALC-GAMMA
alcagamma
HGNC (Hugo) CLSTN2
LocusID (NCBI) 64084
Atlas_Id 61908
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 139935185 and ends at 140568077 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADGRG6 (6q24.1) / CLSTN2 (3q23)HEG1 (3q21.2) / CLSTN2 (3q23)LPP (3q28) / CLSTN2 (3q23)
RORA (15q22.2) / CLSTN2 (3q23)RPS24 (10q22.3) / CLSTN2 (3q23)ZBTB7B (1q21.3) / CLSTN2 (3q23)
GPR126 CLSTN2LPP CLSTN2RORA CLSTN2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLSTN2   17448
Cards
Entrez_Gene (NCBI)CLSTN2  64084  calsyntenin 2
AliasesALC-GAMMA; CDHR13; CS2; CSTN2; 
alcagamma
GeneCards (Weizmann)CLSTN2
Ensembl hg19 (Hinxton)ENSG00000158258 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158258 [Gene_View]  chr3:139935185-140568077 [Contig_View]  CLSTN2 [Vega]
ICGC DataPortalENSG00000158258
TCGA cBioPortalCLSTN2
AceView (NCBI)CLSTN2
Genatlas (Paris)CLSTN2
WikiGenes64084
SOURCE (Princeton)CLSTN2
Genetics Home Reference (NIH)CLSTN2
Genomic and cartography
GoldenPath hg38 (UCSC)CLSTN2  -     chr3:139935185-140568077 +  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLSTN2  -     3q23   [Description]    (hg19-Feb_2009)
EnsemblCLSTN2 - 3q23 [CytoView hg19]  CLSTN2 - 3q23 [CytoView hg38]
Mapping of homologs : NCBICLSTN2 [Mapview hg19]  CLSTN2 [Mapview hg38]
OMIM611323   
Gene and transcription
Genbank (Entrez)AJ278018 AK056411 AK096432 AK096818 AK315308
RefSeq transcript (Entrez)NM_022131
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLSTN2
Cluster EST : UnigeneHs.158529 [ NCBI ]
CGAP (NCI)Hs.158529
Alternative Splicing GalleryENSG00000158258
Gene ExpressionCLSTN2 [ NCBI-GEO ]   CLSTN2 [ EBI - ARRAY_EXPRESS ]   CLSTN2 [ SEEK ]   CLSTN2 [ MEM ]
Gene Expression Viewer (FireBrowse)CLSTN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64084
GTEX Portal (Tissue expression)CLSTN2
Human Protein AtlasENSG00000158258-CLSTN2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4D0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4D0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4D0
Splice isoforms : SwissVarQ9H4D0
PhosPhoSitePlusQ9H4D0
Domaine pattern : Prosite (Expaxy)CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Calsyntenin    ConA-like_dom   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CLSTN2
DMDM Disease mutations64084
Blocks (Seattle)CLSTN2
SuperfamilyQ9H4D0
Human Protein Atlas [tissue]ENSG00000158258-CLSTN2 [tissue]
Peptide AtlasQ9H4D0
HPRD13077
IPIIPI00005491   IPI00942433   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4D0
IntAct (EBI)Q9H4D0
FunCoupENSG00000158258
BioGRIDCLSTN2
STRING (EMBL)CLSTN2
ZODIACCLSTN2
Ontologies - Pathways
QuickGOQ9H4D0
Ontology : AmiGOGolgi membrane  calcium ion binding  endoplasmic reticulum membrane  homophilic cell adhesion via plasma membrane adhesion molecules  cell surface  postsynaptic density  integral component of membrane  postsynaptic membrane  positive regulation of synaptic transmission  positive regulation of synapse assembly  
Ontology : EGO-EBIGolgi membrane  calcium ion binding  endoplasmic reticulum membrane  homophilic cell adhesion via plasma membrane adhesion molecules  cell surface  postsynaptic density  integral component of membrane  postsynaptic membrane  positive regulation of synaptic transmission  positive regulation of synapse assembly  
NDEx NetworkCLSTN2
Atlas of Cancer Signalling NetworkCLSTN2
Wikipedia pathwaysCLSTN2
Orthology - Evolution
OrthoDB64084
GeneTree (enSembl)ENSG00000158258
Phylogenetic Trees/Animal Genes : TreeFamCLSTN2
HOVERGENQ9H4D0
HOGENOMQ9H4D0
Homologs : HomoloGeneCLSTN2
Homology/Alignments : Family Browser (UCSC)CLSTN2
Gene fusions - Rearrangements
Fusion: TCGA_MDACCGPR126 CLSTN2
Fusion: TCGA_MDACCLPP CLSTN2
Fusion: TCGA_MDACCRORA CLSTN2
Tumor Fusion PortalCLSTN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLSTN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLSTN2
dbVarCLSTN2
ClinVarCLSTN2
1000_GenomesCLSTN2 
Exome Variant ServerCLSTN2
ExAC (Exome Aggregation Consortium)ENSG00000158258
GNOMAD BrowserENSG00000158258
Genetic variants : HAPMAP64084
Genomic Variants (DGV)CLSTN2 [DGVbeta]
DECIPHERCLSTN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLSTN2 
Mutations
ICGC Data PortalCLSTN2 
TCGA Data PortalCLSTN2 
Broad Tumor PortalCLSTN2
OASIS PortalCLSTN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLSTN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLSTN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLSTN2
DgiDB (Drug Gene Interaction Database)CLSTN2
DoCM (Curated mutations)CLSTN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLSTN2 (select a term)
intoGenCLSTN2
Cancer3DCLSTN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611323   
Orphanet
DisGeNETCLSTN2
MedgenCLSTN2
Genetic Testing Registry CLSTN2
NextProtQ9H4D0 [Medical]
TSGene64084
GENETestsCLSTN2
Target ValidationCLSTN2
Huge Navigator CLSTN2 [HugePedia]
snp3D : Map Gene to Disease64084
BioCentury BCIQCLSTN2
ClinGenCLSTN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64084
Chemical/Pharm GKB GenePA38239
Clinical trialCLSTN2
Miscellaneous
canSAR (ICR)CLSTN2 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLSTN2
EVEXCLSTN2
GoPubMedCLSTN2
iHOPCLSTN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:07:13 CET 2017

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