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CLSTN3 (calsyntenin 3)

Identity

Alias_symbol (synonym)CSTN3
KIAA0726
CDHR14
Other aliasalcbeta
HGNC (Hugo) CLSTN3
LocusID (NCBI) 9746
Atlas_Id 61910
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 7130371 and ends at 7158934 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLSTN3 (12p13.31) / EFNB1 (Xq13.1)CLSTN3 (12p13.31) / PLCZ1 (12p12.3)CLSTN3 (12p13.31) / SIRT2 (19q13.2)
LOC283314 () / CLSTN3 (12p13.31)PEX5 (12p13.31) / CLSTN3 (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLSTN3   18371
Cards
Entrez_Gene (NCBI)CLSTN3  9746  calsyntenin 3
AliasesCDHR14; CSTN3; alcbeta
GeneCards (Weizmann)CLSTN3
Ensembl hg19 (Hinxton)ENSG00000139182 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139182 [Gene_View]  chr12:7130371-7158934 [Contig_View]  CLSTN3 [Vega]
ICGC DataPortalENSG00000139182
TCGA cBioPortalCLSTN3
AceView (NCBI)CLSTN3
Genatlas (Paris)CLSTN3
WikiGenes9746
SOURCE (Princeton)CLSTN3
Genetics Home Reference (NIH)CLSTN3
Genomic and cartography
GoldenPath hg38 (UCSC)CLSTN3  -     chr12:7130371-7158934 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLSTN3  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblCLSTN3 - 12p13.31 [CytoView hg19]  CLSTN3 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBICLSTN3 [Mapview hg19]  CLSTN3 [Mapview hg38]
OMIM611324   
Gene and transcription
Genbank (Entrez)AA864252 AB018269 AJ277460 AK299177 AK299246
RefSeq transcript (Entrez)NM_014718
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLSTN3
Cluster EST : UnigeneHs.535378 [ NCBI ]
CGAP (NCI)Hs.535378
Alternative Splicing GalleryENSG00000139182
Gene ExpressionCLSTN3 [ NCBI-GEO ]   CLSTN3 [ EBI - ARRAY_EXPRESS ]   CLSTN3 [ SEEK ]   CLSTN3 [ MEM ]
Gene Expression Viewer (FireBrowse)CLSTN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9746
GTEX Portal (Tissue expression)CLSTN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQT9
Splice isoforms : SwissVarQ9BQT9
PhosPhoSitePlusQ9BQT9
Domaine pattern : Prosite (Expaxy)CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Calsyntenin    ConA-like_dom   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CLSTN3
DMDM Disease mutations9746
Blocks (Seattle)CLSTN3
SuperfamilyQ9BQT9
Human Protein AtlasENSG00000139182
Peptide AtlasQ9BQT9
HPRD16725
IPIIPI00747063   IPI00930667   IPI00216891   IPI00396423   IPI01014566   IPI01012952   IPI01015408   IPI01014183   IPI01012973   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQT9
IntAct (EBI)Q9BQT9
FunCoupENSG00000139182
BioGRIDCLSTN3
STRING (EMBL)CLSTN3
ZODIACCLSTN3
Ontologies - Pathways
QuickGOQ9BQT9
Ontology : AmiGOGolgi membrane  regulation of cell growth  calcium ion binding  endoplasmic reticulum membrane  homophilic cell adhesion via plasma membrane adhesion molecules  synapse assembly  cell surface  postsynaptic density  integral component of membrane  synaptic transmission, glutamatergic  protein complex  postsynaptic membrane  positive regulation of synaptic transmission  synaptic transmission, GABAergic  positive regulation of synapse assembly  extracellular exosome  positive regulation of protein localization to synapse  
Ontology : EGO-EBIGolgi membrane  regulation of cell growth  calcium ion binding  endoplasmic reticulum membrane  homophilic cell adhesion via plasma membrane adhesion molecules  synapse assembly  cell surface  postsynaptic density  integral component of membrane  synaptic transmission, glutamatergic  protein complex  postsynaptic membrane  positive regulation of synaptic transmission  synaptic transmission, GABAergic  positive regulation of synapse assembly  extracellular exosome  positive regulation of protein localization to synapse  
NDEx NetworkCLSTN3
Atlas of Cancer Signalling NetworkCLSTN3
Wikipedia pathwaysCLSTN3
Orthology - Evolution
OrthoDB9746
GeneTree (enSembl)ENSG00000139182
Phylogenetic Trees/Animal Genes : TreeFamCLSTN3
HOVERGENQ9BQT9
HOGENOMQ9BQT9
Homologs : HomoloGeneCLSTN3
Homology/Alignments : Family Browser (UCSC)CLSTN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLSTN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLSTN3
dbVarCLSTN3
ClinVarCLSTN3
1000_GenomesCLSTN3 
Exome Variant ServerCLSTN3
ExAC (Exome Aggregation Consortium)CLSTN3 (select the gene name)
Genetic variants : HAPMAP9746
Genomic Variants (DGV)CLSTN3 [DGVbeta]
DECIPHERCLSTN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLSTN3 
Mutations
ICGC Data PortalCLSTN3 
TCGA Data PortalCLSTN3 
Broad Tumor PortalCLSTN3
OASIS PortalCLSTN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLSTN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLSTN3
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CLSTN3
DgiDB (Drug Gene Interaction Database)CLSTN3
DoCM (Curated mutations)CLSTN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLSTN3 (select a term)
intoGenCLSTN3
Cancer3DCLSTN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611324   
Orphanet
MedgenCLSTN3
Genetic Testing Registry CLSTN3
NextProtQ9BQT9 [Medical]
TSGene9746
GENETestsCLSTN3
Target ValidationCLSTN3
Huge Navigator CLSTN3 [HugePedia]
snp3D : Map Gene to Disease9746
BioCentury BCIQCLSTN3
ClinGenCLSTN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9746
Chemical/Pharm GKB GenePA38320
Clinical trialCLSTN3
Miscellaneous
canSAR (ICR)CLSTN3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLSTN3
EVEXCLSTN3
GoPubMedCLSTN3
iHOPCLSTN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:59 CEST 2017

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