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CLUAP1 (clusterin associated protein 1)

Identity

Other namesCFAP22
FAP22
IFT38
HGNC (Hugo) CLUAP1
LocusID (NCBI) 23059
Atlas_Id 45543
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3550945 and ends at 3589051 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CLUAP1 (16p13.3) / NAA60 (16p13.3)NPTN (15q24.1) / CLUAP1 (16p13.3)CLUAP1 16p13.3 / NAA60 16p13.3
NPTN 15q24.1 / CLUAP1 16p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLUAP1   19009
Cards
Entrez_Gene (NCBI)CLUAP1  23059  clusterin associated protein 1
AliasesCFAP22; FAP22; IFT38
GeneCards (Weizmann)CLUAP1
Ensembl hg19 (Hinxton)ENSG00000103351 [Gene_View]  chr16:3550945-3589051 [Contig_View]  CLUAP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000103351 [Gene_View]  chr16:3550945-3589051 [Contig_View]  CLUAP1 [Vega]
ICGC DataPortalENSG00000103351
TCGA cBioPortalCLUAP1
AceView (NCBI)CLUAP1
Genatlas (Paris)CLUAP1
WikiGenes23059
SOURCE (Princeton)CLUAP1
Genomic and cartography
GoldenPath hg19 (UCSC)CLUAP1  -     chr16:3550945-3589051 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLUAP1  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblCLUAP1 - 16p13.3 [CytoView hg19]  CLUAP1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICLUAP1 [Mapview hg19]  CLUAP1 [Mapview hg38]
OMIM616787   
Gene and transcription
Genbank (Entrez)AB014543 AB089691 AK023319 AK023359 AK294318
RefSeq transcript (Entrez)NM_015041 NM_024793
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)CLUAP1
Cluster EST : UnigeneHs.155995 [ NCBI ]
CGAP (NCI)Hs.155995
Alternative Splicing GalleryENSG00000103351
Gene ExpressionCLUAP1 [ NCBI-GEO ]   CLUAP1 [ EBI - ARRAY_EXPRESS ]   CLUAP1 [ SEEK ]   CLUAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CLUAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23059
GTEX Portal (Tissue expression)CLUAP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AJ1 (Uniprot)
NextProtQ96AJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AJ1
Splice isoforms : SwissVarQ96AJ1 (Swissvar)
PhosPhoSitePlusQ96AJ1
Domains : Interpro (EBI)Clusterin-associated_protein-1   
Domain families : Pfam (Sanger)Cluap1 (PF10234)   
Domain families : Pfam (NCBI)pfam10234   
DMDM Disease mutations23059
Blocks (Seattle)CLUAP1
SuperfamilyQ96AJ1
Human Protein AtlasENSG00000103351
Peptide AtlasQ96AJ1
HPRD10013
IPIIPI00746358   IPI00152974   IPI00909803   
Protein Interaction databases
DIP (DOE-UCLA)Q96AJ1
IntAct (EBI)Q96AJ1
FunCoupENSG00000103351
BioGRIDCLUAP1
STRING (EMBL)CLUAP1
ZODIACCLUAP1
Ontologies - Pathways
QuickGOQ96AJ1
Ontology : AmiGOprotein binding  nucleoplasm  centrosome  cilium  intraciliary transport particle B  cilium assembly  intracellular membrane-bounded organelle  primary cilium  ciliary tip  
Ontology : EGO-EBIprotein binding  nucleoplasm  centrosome  cilium  intraciliary transport particle B  cilium assembly  intracellular membrane-bounded organelle  primary cilium  ciliary tip  
NDEx NetworkCLUAP1
Atlas of Cancer Signalling NetworkCLUAP1
Wikipedia pathwaysCLUAP1
Orthology - Evolution
OrthoDB23059
GeneTree (enSembl)ENSG00000103351
Phylogenetic Trees/Animal Genes : TreeFamCLUAP1
Homologs : HomoloGeneCLUAP1
Homology/Alignments : Family Browser (UCSC)CLUAP1
Gene fusions - Rearrangements
Fusion: TCGACLUAP1 16p13.3 NAA60 16p13.3 PRAD
Fusion: TCGANPTN 15q24.1 CLUAP1 16p13.3 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerCLUAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLUAP1
dbVarCLUAP1
ClinVarCLUAP1
1000_GenomesCLUAP1 
Exome Variant ServerCLUAP1
ExAC (Exome Aggregation Consortium)CLUAP1 (select the gene name)
Genetic variants : HAPMAP23059
Genomic Variants (DGV)CLUAP1 [DGVbeta]
Mutations
ICGC Data PortalCLUAP1 
TCGA Data PortalCLUAP1 
Broad Tumor PortalCLUAP1
OASIS PortalCLUAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLUAP1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLUAP1
DgiDB (Drug Gene Interaction Database)CLUAP1
DoCM (Curated mutations)CLUAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLUAP1 (select a term)
intoGenCLUAP1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:3550945-3589051  ENSG00000103351
CONAN: Copy Number AnalysisCLUAP1 
Mutations and Diseases : HGMDCLUAP1
OMIM616787   
MedgenCLUAP1
Genetic Testing Registry CLUAP1
NextProtQ96AJ1 [Medical]
TSGene23059
GENETestsCLUAP1
Huge Navigator CLUAP1 [HugePedia]
snp3D : Map Gene to Disease23059
BioCentury BCIQCLUAP1
ClinGenCLUAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23059
Chemical/Pharm GKB GenePA128394600
Clinical trialCLUAP1
Miscellaneous
canSAR (ICR)CLUAP1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLUAP1
EVEXCLUAP1
GoPubMedCLUAP1
iHOPCLUAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:43:00 CEST 2016

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