Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CLUAP1 (clusterin associated protein 1)

Identity

Other namesCFAP22
FAP22
HGNC (Hugo) CLUAP1
LocusID (NCBI) 23059
Location 16p13.3
Location_base_pair Starts at 3550945 and ends at 3589051 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CLUAP1   19009
Cards
Entrez_Gene (NCBI)CLUAP1  23059  clusterin associated protein 1
GeneCards (Weizmann)CLUAP1
Ensembl (Hinxton)ENSG00000103351 [Gene_View]  chr16:3550945-3589051 [Contig_View]  CLUAP1 [Vega]
ICGC DataPortalENSG00000103351
cBioPortalCLUAP1
AceView (NCBI)CLUAP1
Genatlas (Paris)CLUAP1
WikiGenes23059
SOURCE (Princeton)NM_015041 NM_024793
Genomic and cartography
GoldenPath (UCSC)CLUAP1  -  16p13.3   chr16:3550945-3589051 +  16p13.3   [Description]    (hg19-Feb_2009)
EnsemblCLUAP1 - 16p13.3 [CytoView]
Mapping of homologs : NCBICLUAP1 [Mapview]
Gene and transcription
Genbank (Entrez)AB014543 AB089691 AK023319 AK023359 AK294318
RefSeq transcript (Entrez)NM_015041 NM_024793
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_010393 NW_001838341 NW_004929400
Consensus coding sequences : CCDS (NCBI)CLUAP1
Cluster EST : UnigeneHs.155995 [ NCBI ]
CGAP (NCI)Hs.155995
Alternative Splicing : Fast-db (Paris)GSHG0010905
Alternative Splicing GalleryENSG00000103351
Gene ExpressionCLUAP1 [ NCBI-GEO ]     CLUAP1 [ SEEK ]   CLUAP1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AJ1 (Uniprot)
NextProtQ96AJ1  [Medical]
With graphics : InterProQ96AJ1
Splice isoforms : SwissVarQ96AJ1 (Swissvar)
Domains : Interpro (EBI)Clusterin-associated_protein-1 [organisation]  
Related proteins : CluSTrQ96AJ1
Domain families : Pfam (Sanger)Cluap1 (PF10234)   
Domain families : Pfam (NCBI)pfam10234   
DMDM Disease mutations23059
Blocks (Seattle)Q96AJ1
Human Protein AtlasENSG00000103351 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ96AJ1
HPRD10013
IPIIPI00746358   IPI00152974   IPI00909803   
Protein Interaction databases
DIP (DOE-UCLA)Q96AJ1
IntAct (EBI)Q96AJ1
FunCoupENSG00000103351
BioGRIDCLUAP1
InParanoidQ96AJ1
Interologous Interaction database Q96AJ1
IntegromeDBCLUAP1
STRING (EMBL)CLUAP1
Ontologies - Pathways
Ontology : AmiGOprotein binding  nucleus  nucleolus  cilium  cell projection organization  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  cilium  cell projection organization  intracellular membrane-bounded organelle  
Protein Interaction DatabaseCLUAP1
Wikipedia pathwaysCLUAP1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CLUAP1
snp3D : Map Gene to Disease23059
SNP (GeneSNP Utah)CLUAP1
SNP : HGBaseCLUAP1
Genetic variants : HAPMAPCLUAP1
Exome VariantCLUAP1
1000_GenomesCLUAP1 
ICGC programENSG00000103351 
Somatic Mutations in Cancer : COSMICCLUAP1 
CONAN: Copy Number AnalysisCLUAP1 
Mutations and Diseases : HGMDCLUAP1
Mutations and Diseases : intOGenCLUAP1
Genomic VariantsCLUAP1  CLUAP1 [DGVbeta]
dbVarCLUAP1
ClinVarCLUAP1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM
MedgenCLUAP1
GENETestsCLUAP1
Disease Genetic AssociationCLUAP1
Huge Navigator CLUAP1 [HugePedia]  CLUAP1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCLUAP1
Homology/Alignments : Family Browser (UCSC)CLUAP1
Phylogenetic Trees/Animal Genes : TreeFamCLUAP1
Chemical/Protein Interactions : CTD23059
Chemical/Pharm GKB GenePA128394600
Clinical trialCLUAP1
Cancer Resource (Charite)ENSG00000103351
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
CoreMineCLUAP1
iHOPCLUAP1
OncoSearchCLUAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:45:08 CEST 2014

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