Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CLUAP1 (clusterin associated protein 1)

Identity

Other namesCFAP22
FAP22
HGNC (Hugo) CLUAP1
LocusID (NCBI) 23059
Atlas_Id 45543
Location 16p13.3
Location_base_pair Starts at 3550945 and ends at 3589051 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CLUAP1   19009
Cards
Entrez_Gene (NCBI)CLUAP1  23059  clusterin associated protein 1
GeneCards (Weizmann)CLUAP1
Ensembl hg19 (Hinxton)ENSG00000103351 [Gene_View]  chr16:3550945-3589051 [Contig_View]  CLUAP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000103351 [Gene_View]  chr16:3550945-3589051 [Contig_View]  CLUAP1 [Vega]
ICGC DataPortalENSG00000103351
TCGA cBioPortalCLUAP1
AceView (NCBI)CLUAP1
Genatlas (Paris)CLUAP1
WikiGenes23059
SOURCE (Princeton)CLUAP1
Genomic and cartography
GoldenPath hg19 (UCSC)CLUAP1  -     chr16:3550945-3589051 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLUAP1  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblCLUAP1 - 16p13.3 [CytoView hg19]  CLUAP1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICLUAP1 [Mapview hg19]  CLUAP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB014543 AB089691 AK023319 AK023359 AK294318
RefSeq transcript (Entrez)NM_015041 NM_024793
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)CLUAP1
Cluster EST : UnigeneHs.155995 [ NCBI ]
CGAP (NCI)Hs.155995
Alternative Splicing : Fast-db (Paris)GSHG0010905
Alternative Splicing GalleryENSG00000103351
Gene ExpressionCLUAP1 [ NCBI-GEO ]     CLUAP1 [ SEEK ]   CLUAP1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AJ1 (Uniprot)
NextProtQ96AJ1  [Medical]
With graphics : InterProQ96AJ1
Splice isoforms : SwissVarQ96AJ1 (Swissvar)
Domains : Interpro (EBI)Clusterin-associated_protein-1   
Related proteins : CluSTrQ96AJ1
Domain families : Pfam (Sanger)Cluap1 (PF10234)   
Domain families : Pfam (NCBI)pfam10234   
DMDM Disease mutations23059
Blocks (Seattle)Q96AJ1
Human Protein AtlasENSG00000103351
Peptide AtlasQ96AJ1
HPRD10013
IPIIPI00746358   IPI00152974   IPI00909803   
Protein Interaction databases
DIP (DOE-UCLA)Q96AJ1
IntAct (EBI)Q96AJ1
FunCoupENSG00000103351
BioGRIDCLUAP1
IntegromeDBCLUAP1
STRING (EMBL)CLUAP1
Ontologies - Pathways
QuickGOQ96AJ1
Ontology : AmiGOprotein binding  nucleoplasm  centrosome  cilium  organelle organization  intraciliary transport particle B  cilium assembly  intracellular membrane-bounded organelle  primary cilium  ciliary tip  
Ontology : EGO-EBIprotein binding  nucleoplasm  centrosome  cilium  organelle organization  intraciliary transport particle B  cilium assembly  intracellular membrane-bounded organelle  primary cilium  ciliary tip  
Protein Interaction DatabaseCLUAP1
DoCM (Curated mutations)CLUAP1
Wikipedia pathwaysCLUAP1
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerCLUAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLUAP1
dbVarCLUAP1
ClinVarCLUAP1
1000_GenomesCLUAP1 
Exome Variant ServerCLUAP1
SNP (GeneSNP Utah)CLUAP1
SNP : HGBaseCLUAP1
Genetic variants : HAPMAPCLUAP1
Genomic Variants (DGV)CLUAP1 [DGVbeta]
Mutations
ICGC Data PortalCLUAP1 
TCGA Data PortalCLUAP1 
Tumor PortalCLUAP1
Somatic Mutations in Cancer : COSMICCLUAP1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:3550945-3589051
CONAN: Copy Number AnalysisCLUAP1 
Mutations and Diseases : HGMDCLUAP1
OMIM
MedgenCLUAP1
NextProtQ96AJ1 [Medical]
GENETestsCLUAP1
Disease Genetic AssociationCLUAP1
Huge Navigator CLUAP1 [HugePedia]  CLUAP1 [HugeCancerGEM]
snp3D : Map Gene to Disease23059
DGIdb (Drug Gene Interaction db)CLUAP1
General knowledge
Homologs : HomoloGeneCLUAP1
Homology/Alignments : Family Browser (UCSC)CLUAP1
Phylogenetic Trees/Animal Genes : TreeFamCLUAP1
Chemical/Protein Interactions : CTD23059
Chemical/Pharm GKB GenePA128394600
Clinical trialCLUAP1
Cancer Resource (Charite)ENSG00000103351
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
CoreMineCLUAP1
GoPubMedCLUAP1
iHOPCLUAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Apr 13 14:13:58 CEST 2015

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