Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CLUHP3 (clustered mitochondria homolog pseudogene 3)

Identity

Alias_namesC16orf67
KIAA0664P3
KIAA0664L3
chromosome 16 open reading frame 67
KIAA0664 pseudogene 3
KIAA0664-like 3
clustered mitochondria (cluA/CLU1) homolog pseudogene 3
Alias_symbol (synonym)MGC3020
Other aliasURLC3
HGNC (Hugo) CLUHP3
LocusID (NCBI) 100132341
Atlas_Id 61913
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 31700590 and ends at 31707424 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLUHP3   28447
Cards
Entrez_Gene (NCBI)CLUHP3  100132341  clustered mitochondria homolog pseudogene 3
AliasesC16orf67; KIAA0664L3; KIAA0664P3; URLC3
GeneCards (Weizmann)CLUHP3
Ensembl hg19 (Hinxton)ENSG00000131797 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131797 [Gene_View]  chr16:31700590-31707424 [Contig_View]  CLUHP3 [Vega]
ICGC DataPortalENSG00000131797
TCGA cBioPortalCLUHP3
AceView (NCBI)CLUHP3
Genatlas (Paris)CLUHP3
WikiGenes100132341
SOURCE (Princeton)CLUHP3
Genetics Home Reference (NIH)CLUHP3
Genomic and cartography
GoldenPath hg38 (UCSC)CLUHP3  -     chr16:31700590-31707424 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLUHP3  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblCLUHP3 - 16p11.2 [CytoView hg19]  CLUHP3 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBICLUHP3 [Mapview hg19]  CLUHP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB101205 AK054698 BC000552 BC021555
RefSeq transcript (Entrez)NM_024048
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLUHP3
Cluster EST : UnigeneHs.715792 [ NCBI ]
CGAP (NCI)Hs.715792
Alternative Splicing GalleryENSG00000131797
Gene ExpressionCLUHP3 [ NCBI-GEO ]   CLUHP3 [ EBI - ARRAY_EXPRESS ]   CLUHP3 [ SEEK ]   CLUHP3 [ MEM ]
Gene Expression Viewer (FireBrowse)CLUHP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132341
GTEX Portal (Tissue expression)CLUHP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NS8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NS8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NS8
Splice isoforms : SwissVarQ96NS8
PhosPhoSitePlusQ96NS8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CLUHP3
DMDM Disease mutations100132341
Blocks (Seattle)CLUHP3
SuperfamilyQ96NS8
Human Protein AtlasENSG00000131797
Peptide AtlasQ96NS8
IPIIPI00641724   
Protein Interaction databases
DIP (DOE-UCLA)Q96NS8
IntAct (EBI)Q96NS8
FunCoupENSG00000131797
BioGRIDCLUHP3
STRING (EMBL)CLUHP3
ZODIACCLUHP3
Ontologies - Pathways
QuickGOQ96NS8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCLUHP3
Atlas of Cancer Signalling NetworkCLUHP3
Wikipedia pathwaysCLUHP3
Orthology - Evolution
OrthoDB100132341
GeneTree (enSembl)ENSG00000131797
Phylogenetic Trees/Animal Genes : TreeFamCLUHP3
HOVERGENQ96NS8
HOGENOMQ96NS8
Homologs : HomoloGeneCLUHP3
Homology/Alignments : Family Browser (UCSC)CLUHP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLUHP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLUHP3
dbVarCLUHP3
ClinVarCLUHP3
1000_GenomesCLUHP3 
Exome Variant ServerCLUHP3
ExAC (Exome Aggregation Consortium)CLUHP3 (select the gene name)
Genetic variants : HAPMAP100132341
Genomic Variants (DGV)CLUHP3 [DGVbeta]
DECIPHERCLUHP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLUHP3 
Mutations
ICGC Data PortalCLUHP3 
TCGA Data PortalCLUHP3 
Broad Tumor PortalCLUHP3
OASIS PortalCLUHP3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCLUHP3
BioMutasearch CLUHP3
DgiDB (Drug Gene Interaction Database)CLUHP3
DoCM (Curated mutations)CLUHP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLUHP3 (select a term)
intoGenCLUHP3
Cancer3DCLUHP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLUHP3
Genetic Testing Registry CLUHP3
NextProtQ96NS8 [Medical]
TSGene100132341
GENETestsCLUHP3
Target ValidationCLUHP3
Huge Navigator CLUHP3 [HugePedia]
snp3D : Map Gene to Disease100132341
BioCentury BCIQCLUHP3
ClinGenCLUHP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132341
Chemical/Pharm GKB GenePA165450130
Clinical trialCLUHP3
Miscellaneous
canSAR (ICR)CLUHP3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLUHP3
EVEXCLUHP3
GoPubMedCLUHP3
iHOPCLUHP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:00 CEST 2017

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