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CLUL1 (clusterin like 1)

Identity

Alias_namesclusterin-like 1 (retinal)
Other aliasRA337M
HGNC (Hugo) CLUL1
LocusID (NCBI) 27098
Atlas_Id 61914
Location 18p11.32  [Link to chromosome band 18p11]
Location_base_pair Starts at 596998 and ends at 650293 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COLEC12 (18p11.32) / CLUL1 (18p11.32)EXT1 (8q24.11) / CLUL1 (18p11.32)MYO5B (18q21.1) / CLUL1 (18p11.32)
MYO5B CLUL1COLEC12 CLUL1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLUL1   2096
Cards
Entrez_Gene (NCBI)CLUL1  27098  clusterin like 1
AliasesRA337M
GeneCards (Weizmann)CLUL1
Ensembl hg19 (Hinxton)ENSG00000079101 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000079101 [Gene_View]  chr18:596998-650293 [Contig_View]  CLUL1 [Vega]
ICGC DataPortalENSG00000079101
TCGA cBioPortalCLUL1
AceView (NCBI)CLUL1
Genatlas (Paris)CLUL1
WikiGenes27098
SOURCE (Princeton)CLUL1
Genetics Home Reference (NIH)CLUL1
Genomic and cartography
GoldenPath hg38 (UCSC)CLUL1  -     chr18:596998-650293 +  18p11.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLUL1  -     18p11.32   [Description]    (hg19-Feb_2009)
EnsemblCLUL1 - 18p11.32 [CytoView hg19]  CLUL1 - 18p11.32 [CytoView hg38]
Mapping of homologs : NCBICLUL1 [Mapview hg19]  CLUL1 [Mapview hg38]
OMIM616990   
Gene and transcription
Genbank (Entrez)AF395889 AK299319 AL712819 AL713125 BC025381
RefSeq transcript (Entrez)NM_001289036 NM_001318522 NM_014410 NM_199167
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLUL1
Cluster EST : UnigeneHs.732341 [ NCBI ]
CGAP (NCI)Hs.732341
Alternative Splicing GalleryENSG00000079101
Gene ExpressionCLUL1 [ NCBI-GEO ]   CLUL1 [ EBI - ARRAY_EXPRESS ]   CLUL1 [ SEEK ]   CLUL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CLUL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27098
GTEX Portal (Tissue expression)CLUL1
Human Protein AtlasENSG00000079101-CLUL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15846   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15846  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15846
Splice isoforms : SwissVarQ15846
PhosPhoSitePlusQ15846
Domains : Interpro (EBI)Clusterin-like    Clusterin_C    Clusterin_N   
Domain families : Pfam (Sanger)Clusterin (PF01093)   
Domain families : Pfam (NCBI)pfam01093   
Domain families : Smart (EMBL)CLa (SM00035)  CLb (SM00030)  
Conserved Domain (NCBI)CLUL1
DMDM Disease mutations27098
Blocks (Seattle)CLUL1
SuperfamilyQ15846
Human Protein Atlas [tissue]ENSG00000079101-CLUL1 [tissue]
Peptide AtlasQ15846
HPRD16726
IPIIPI01010861   IPI00874000   
Protein Interaction databases
DIP (DOE-UCLA)Q15846
IntAct (EBI)Q15846
FunCoupENSG00000079101
BioGRIDCLUL1
STRING (EMBL)CLUL1
ZODIACCLUL1
Ontologies - Pathways
QuickGOQ15846
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkCLUL1
Atlas of Cancer Signalling NetworkCLUL1
Wikipedia pathwaysCLUL1
Orthology - Evolution
OrthoDB27098
GeneTree (enSembl)ENSG00000079101
Phylogenetic Trees/Animal Genes : TreeFamCLUL1
HOVERGENQ15846
HOGENOMQ15846
Homologs : HomoloGeneCLUL1
Homology/Alignments : Family Browser (UCSC)CLUL1
Gene fusions - Rearrangements
Fusion: TCGAMYO5B CLUL1
Fusion: TCGACOLEC12 CLUL1
Fusion: Tumor Portal CLUL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLUL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLUL1
dbVarCLUL1
ClinVarCLUL1
1000_GenomesCLUL1 
Exome Variant ServerCLUL1
ExAC (Exome Aggregation Consortium)ENSG00000079101
GNOMAD BrowserENSG00000079101
Genetic variants : HAPMAP27098
Genomic Variants (DGV)CLUL1 [DGVbeta]
DECIPHERCLUL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLUL1 
Mutations
ICGC Data PortalCLUL1 
TCGA Data PortalCLUL1 
Broad Tumor PortalCLUL1
OASIS PortalCLUL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLUL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLUL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLUL1
DgiDB (Drug Gene Interaction Database)CLUL1
DoCM (Curated mutations)CLUL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLUL1 (select a term)
intoGenCLUL1
Cancer3DCLUL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616990   
Orphanet
MedgenCLUL1
Genetic Testing Registry CLUL1
NextProtQ15846 [Medical]
TSGene27098
GENETestsCLUL1
Target ValidationCLUL1
Huge Navigator CLUL1 [HugePedia]
snp3D : Map Gene to Disease27098
BioCentury BCIQCLUL1
ClinGenCLUL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27098
Chemical/Pharm GKB GenePA26621
Clinical trialCLUL1
Miscellaneous
canSAR (ICR)CLUL1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLUL1
EVEXCLUL1
GoPubMedCLUL1
iHOPCLUL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:42:53 CET 2017

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