Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CLYBL (citrate lyase beta like)

Identity

Alias_symbol (synonym)CLB
Other alias
HGNC (Hugo) CLYBL
LocusID (NCBI) 171425
Atlas_Id 61916
Location 13q32.3  [Link to chromosome band 13q32]
Location_base_pair Starts at 99606664 and ends at 99892764 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADAM9 (8p11.22) / CLYBL (13q32.3)PCCA (13q32.3) / CLYBL (13q32.3)SPAG9 (17q21.33) / CLYBL (13q32.3)
PCCA CLYBLADAM9 CLYBLSPAG9 CLYBL

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLYBL   18355
Cards
Entrez_Gene (NCBI)CLYBL  171425  citrate lyase beta like
AliasesCLB
GeneCards (Weizmann)CLYBL
Ensembl hg19 (Hinxton)ENSG00000125246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125246 [Gene_View]  chr13:99606664-99892764 [Contig_View]  CLYBL [Vega]
ICGC DataPortalENSG00000125246
TCGA cBioPortalCLYBL
AceView (NCBI)CLYBL
Genatlas (Paris)CLYBL
WikiGenes171425
SOURCE (Princeton)CLYBL
Genetics Home Reference (NIH)CLYBL
Genomic and cartography
GoldenPath hg38 (UCSC)CLYBL  -     chr13:99606664-99892764 +  13q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLYBL  -     13q32.3   [Description]    (hg19-Feb_2009)
EnsemblCLYBL - 13q32.3 [CytoView hg19]  CLYBL - 13q32.3 [CytoView hg38]
Mapping of homologs : NCBICLYBL [Mapview hg19]  CLYBL [Mapview hg38]
OMIM609686   
Gene and transcription
Genbank (Entrez)AF428253 AK095506 AK300510 AW247892 BC034360
RefSeq transcript (Entrez)NM_206808
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLYBL
Cluster EST : UnigeneHs.655642 [ NCBI ]
CGAP (NCI)Hs.655642
Alternative Splicing GalleryENSG00000125246
Gene ExpressionCLYBL [ NCBI-GEO ]   CLYBL [ EBI - ARRAY_EXPRESS ]   CLYBL [ SEEK ]   CLYBL [ MEM ]
Gene Expression Viewer (FireBrowse)CLYBL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)171425
GTEX Portal (Tissue expression)CLYBL
Human Protein AtlasENSG00000125246-CLYBL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0X4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0X4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0X4
Splice isoforms : SwissVarQ8N0X4
PhosPhoSitePlusQ8N0X4
Domains : Interpro (EBI)Aldolase/citrate-lyase_domain    Citrate_lyase_beta/mcl1/mcl2    Pyrv/PenolPyrv_Kinase-like_dom   
Domain families : Pfam (Sanger)HpcH_HpaI (PF03328)   
Domain families : Pfam (NCBI)pfam03328   
Conserved Domain (NCBI)CLYBL
DMDM Disease mutations171425
Blocks (Seattle)CLYBL
SuperfamilyQ8N0X4
Human Protein Atlas [tissue]ENSG00000125246-CLYBL [tissue]
Peptide AtlasQ8N0X4
HPRD10838
IPIIPI00477957   IPI00641200   IPI00910998   IPI00643589   IPI00552997   IPI00552170   IPI00640093   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0X4
IntAct (EBI)Q8N0X4
FunCoupENSG00000125246
BioGRIDCLYBL
STRING (EMBL)CLYBL
ZODIACCLYBL
Ontologies - Pathways
QuickGOQ8N0X4
Ontology : AmiGOmagnesium ion binding  malate synthase activity  mitochondrion  
Ontology : EGO-EBImagnesium ion binding  malate synthase activity  mitochondrion  
NDEx NetworkCLYBL
Atlas of Cancer Signalling NetworkCLYBL
Wikipedia pathwaysCLYBL
Orthology - Evolution
OrthoDB171425
GeneTree (enSembl)ENSG00000125246
Phylogenetic Trees/Animal Genes : TreeFamCLYBL
HOVERGENQ8N0X4
HOGENOMQ8N0X4
Homologs : HomoloGeneCLYBL
Homology/Alignments : Family Browser (UCSC)CLYBL
Gene fusions - Rearrangements
Fusion: TCGAPCCA CLYBL
Fusion: TCGAADAM9 CLYBL
Fusion: TCGASPAG9 CLYBL
Fusion: Tumor Portal CLYBL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLYBL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLYBL
dbVarCLYBL
ClinVarCLYBL
1000_GenomesCLYBL 
Exome Variant ServerCLYBL
ExAC (Exome Aggregation Consortium)ENSG00000125246
GNOMAD BrowserENSG00000125246
Genetic variants : HAPMAP171425
Genomic Variants (DGV)CLYBL [DGVbeta]
DECIPHERCLYBL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLYBL 
Mutations
ICGC Data PortalCLYBL 
TCGA Data PortalCLYBL 
Broad Tumor PortalCLYBL
OASIS PortalCLYBL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLYBL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLYBL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CLYBL
DgiDB (Drug Gene Interaction Database)CLYBL
DoCM (Curated mutations)CLYBL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLYBL (select a term)
intoGenCLYBL
Cancer3DCLYBL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609686   
Orphanet
MedgenCLYBL
Genetic Testing Registry CLYBL
NextProtQ8N0X4 [Medical]
TSGene171425
GENETestsCLYBL
Target ValidationCLYBL
Huge Navigator CLYBL [HugePedia]
snp3D : Map Gene to Disease171425
BioCentury BCIQCLYBL
ClinGenCLYBL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD171425
Chemical/Pharm GKB GenePA26622
Clinical trialCLYBL
Miscellaneous
canSAR (ICR)CLYBL (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLYBL
EVEXCLYBL
GoPubMedCLYBL
iHOPCLYBL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:42:53 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.