Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CMAHP (cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene)

Identity

Alias (NCBI)CMAH
CSAH
HGNC (Hugo) CMAHP
HGNC Previous nameCMAH
HGNC Previous namecytidine monophosphate-N-acetylneuraminic acid hydroxylase (CMP-N-acetylneuraminate monooxygenase)(pseudogene)
LocusID (NCBI) 8418
Atlas_Id 56557
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 25107973 and ends at 25138392 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATF6B (6p21.33) / CMAHP (6p22.3)CMAHP (6p22.3) / CMAHP (6p22.3)CMAHP (6p22.3) / LRRC16A (6p22.2)
TNXB (6p21.33) / CMAHP (6p22.3)ZBTB24 (6q21) / CMAHP (6p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CMAHP   2098
Cards
Entrez_Gene (NCBI)CMAHP    cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene
AliasesCMAH; CSAH
GeneCards (Weizmann)CMAHP
Ensembl hg19 (Hinxton)ENSG00000168405 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168405 [Gene_View]  ENSG00000168405 [Sequence]  chr6:25107973-25138392 [Contig_View]  CMAHP [Vega]
ICGC DataPortalENSG00000168405
TCGA cBioPortalCMAHP
AceView (NCBI)CMAHP
Genatlas (Paris)CMAHP
SOURCE (Princeton)CMAHP
Genetics Home Reference (NIH)CMAHP
Genomic and cartography
GoldenPath hg38 (UCSC)CMAHP  -     chr6:25107973-25138392 -  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMAHP  -     6p22.3   [Description]    (hg19-Feb_2009)
GoldenPathCMAHP - 6p22.3 [CytoView hg19]  CMAHP - 6p22.3 [CytoView hg38]
ImmunoBaseENSG00000168405
genome Data Viewer NCBICMAHP [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF074480 AK000716 AK303297 BC022302 BC032500
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CMAHP
Alternative Splicing GalleryENSG00000168405
Gene ExpressionCMAHP [ NCBI-GEO ]   CMAHP [ EBI - ARRAY_EXPRESS ]   CMAHP [ SEEK ]   CMAHP [ MEM ]
Gene Expression Viewer (FireBrowse)CMAHP [ Firebrowse - Broad ]
GenevisibleExpression of CMAHP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8418
GTEX Portal (Tissue expression)CMAHP
Human Protein AtlasENSG00000168405-CMAHP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y471   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y471  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y471
Splice isoforms : SwissVarQ9Y471
PhosPhoSitePlusQ9Y471
Domaine pattern : Prosite (Expaxy)RIESKE (PS51296)   
Domains : Interpro (EBI)Cnh    RibonucZ/Hydroxyglut_hydro   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CMAHP
Blocks (Seattle)CMAHP
SuperfamilyQ9Y471
Human Protein Atlas [tissue]ENSG00000168405-CMAHP [tissue]
Peptide AtlasQ9Y471
IPIIPI00921331   IPI00641802   IPI00555951   IPI00418499   IPI00641313   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y471
IntAct (EBI)Q9Y471
BioGRIDCMAHP
STRING (EMBL)CMAHP
ZODIACCMAHP
Ontologies - Pathways
QuickGOQ9Y471
Ontology : AmiGOnucleus  cytoplasm  cytoskeleton  membrane  regulation of Wnt signaling pathway  CMP-N-acetylneuraminate monooxygenase activity  
Ontology : EGO-EBInucleus  cytoplasm  cytoskeleton  membrane  regulation of Wnt signaling pathway  CMP-N-acetylneuraminate monooxygenase activity  
NDEx NetworkCMAHP
Atlas of Cancer Signalling NetworkCMAHP
Wikipedia pathwaysCMAHP
Orthology - Evolution
OrthoDB8418
GeneTree (enSembl)ENSG00000168405
Phylogenetic Trees/Animal Genes : TreeFamCMAHP
HOGENOMQ9Y471
Homologs : HomoloGeneCMAHP
Homology/Alignments : Family Browser (UCSC)CMAHP
Gene fusions - Rearrangements
Fusion : QuiverCMAHP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMAHP [hg38]
dbVarCMAHP
ClinVarCMAHP
MonarchCMAHP
1000_GenomesCMAHP 
Exome Variant ServerCMAHP
GNOMAD BrowserENSG00000168405
Varsome BrowserCMAHP
Genomic Variants (DGV)CMAHP [DGVbeta]
DECIPHERCMAHP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMAHP 
Mutations
ICGC Data PortalCMAHP 
TCGA Data PortalCMAHP 
Broad Tumor PortalCMAHP
OASIS PortalCMAHP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCMAHP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMAHP
DgiDB (Drug Gene Interaction Database)CMAHP
DoCM (Curated mutations)CMAHP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMAHP (select a term)
intoGenCMAHP
Cancer3DCMAHP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCMAHP
MedgenCMAHP
Genetic Testing Registry CMAHP
NextProtQ9Y471 [Medical]
GENETestsCMAHP
Target ValidationCMAHP
Huge Navigator CMAHP [HugePedia]
ClinGenCMAHP
Clinical trials, drugs, therapy
MyCancerGenomeCMAHP
Protein Interactions : CTD
Pharm GKB GenePA26624
PharosQ9Y471
Clinical trialCMAHP
Miscellaneous
canSAR (ICR)CMAHP (select the gene name)
HarmonizomeCMAHP
DataMed IndexCMAHP
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCMAHP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:16:07 CET 2021

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