Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CMAS (cytidine monophosphate N-acetylneuraminic acid synthetase)

Identity

Other aliasCSS
HGNC (Hugo) CMAS
LocusID (NCBI) 55907
Atlas_Id 61920
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 22199110 and ends at 22218606 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CMAS (12p12.1) / ALB (4q13.3)CMAS (12p12.1) / CMAS (12p12.1)GALNT7 (4q34.1) / CMAS (12p12.1)
RBM10 (Xp11.23) / CMAS (12p12.1)SH3RF1 (4q32.3) / CMAS (12p12.1)TCF12 (15q21.3) / CMAS (12p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMAS   18290
Cards
Entrez_Gene (NCBI)CMAS  55907  cytidine monophosphate N-acetylneuraminic acid synthetase
AliasesCSS
GeneCards (Weizmann)CMAS
Ensembl hg19 (Hinxton)ENSG00000111726 [Gene_View]  chr12:22199110-22218606 [Contig_View]  CMAS [Vega]
Ensembl hg38 (Hinxton)ENSG00000111726 [Gene_View]  chr12:22199110-22218606 [Contig_View]  CMAS [Vega]
ICGC DataPortalENSG00000111726
TCGA cBioPortalCMAS
AceView (NCBI)CMAS
Genatlas (Paris)CMAS
WikiGenes55907
SOURCE (Princeton)CMAS
Genetics Home Reference (NIH)CMAS
Genomic and cartography
GoldenPath hg19 (UCSC)CMAS  -     chr12:22199110-22218606 +  12p12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CMAS  -     12p12.1   [Description]    (hg38-Dec_2013)
EnsemblCMAS - 12p12.1 [CytoView hg19]  CMAS - 12p12.1 [CytoView hg38]
Mapping of homologs : NCBICMAS [Mapview hg19]  CMAS [Mapview hg38]
OMIM603316   
Gene and transcription
Genbank (Entrez)AF271388 AF397212 AK022927 AK124990 AK222981
RefSeq transcript (Entrez)NM_018686
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)CMAS
Cluster EST : UnigeneHs.311346 [ NCBI ]
CGAP (NCI)Hs.311346
Alternative Splicing GalleryENSG00000111726
Gene ExpressionCMAS [ NCBI-GEO ]   CMAS [ EBI - ARRAY_EXPRESS ]   CMAS [ SEEK ]   CMAS [ MEM ]
Gene Expression Viewer (FireBrowse)CMAS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55907
GTEX Portal (Tissue expression)CMAS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFW8
Splice isoforms : SwissVarQ8NFW8
Catalytic activity : Enzyme2.7.7.43 [ Enzyme-Expasy ]   2.7.7.432.7.7.43 [ IntEnz-EBI ]   2.7.7.43 [ BRENDA ]   2.7.7.43 [ KEGG ]   
PhosPhoSitePlusQ8NFW8
Domains : Interpro (EBI)Cytidylyl_trans    HAD-like_dom    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)CTP_transf_3 (PF02348)   
Domain families : Pfam (NCBI)pfam02348   
Conserved Domain (NCBI)CMAS
DMDM Disease mutations55907
Blocks (Seattle)CMAS
SuperfamilyQ8NFW8
Human Protein AtlasENSG00000111726
Peptide AtlasQ8NFW8
HPRD04501
IPIIPI00303158   IPI00479958   IPI01011221   IPI01009140   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFW8
IntAct (EBI)Q8NFW8
FunCoupENSG00000111726
BioGRIDCMAS
STRING (EMBL)CMAS
ZODIACCMAS
Ontologies - Pathways
QuickGOQ8NFW8
Ontology : AmiGOnucleus  nucleoplasm  N-acetylneuraminate metabolic process  dolichol-linked oligosaccharide biosynthetic process  N-acylneuraminate cytidylyltransferase activity  membrane  protein N-linked glycosylation via asparagine  post-translational protein modification  cellular protein metabolic process  
Ontology : EGO-EBInucleus  nucleoplasm  N-acetylneuraminate metabolic process  dolichol-linked oligosaccharide biosynthetic process  N-acylneuraminate cytidylyltransferase activity  membrane  protein N-linked glycosylation via asparagine  post-translational protein modification  cellular protein metabolic process  
Pathways : KEGGAmino sugar and nucleotide sugar metabolism   
NDEx NetworkCMAS
Atlas of Cancer Signalling NetworkCMAS
Wikipedia pathwaysCMAS
Orthology - Evolution
OrthoDB55907
GeneTree (enSembl)ENSG00000111726
Phylogenetic Trees/Animal Genes : TreeFamCMAS
HOVERGENQ8NFW8
HOGENOMQ8NFW8
Homologs : HomoloGeneCMAS
Homology/Alignments : Family Browser (UCSC)CMAS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMAS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMAS
dbVarCMAS
ClinVarCMAS
1000_GenomesCMAS 
Exome Variant ServerCMAS
ExAC (Exome Aggregation Consortium)CMAS (select the gene name)
Genetic variants : HAPMAP55907
Genomic Variants (DGV)CMAS [DGVbeta]
DECIPHER (Syndromes)12:22199110-22218606  ENSG00000111726
CONAN: Copy Number AnalysisCMAS 
Mutations
ICGC Data PortalCMAS 
TCGA Data PortalCMAS 
Broad Tumor PortalCMAS
OASIS PortalCMAS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMAS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCMAS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMAS
DgiDB (Drug Gene Interaction Database)CMAS
DoCM (Curated mutations)CMAS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMAS (select a term)
intoGenCMAS
Cancer3DCMAS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603316   
Orphanet
MedgenCMAS
Genetic Testing Registry CMAS
NextProtQ8NFW8 [Medical]
TSGene55907
GENETestsCMAS
Huge Navigator CMAS [HugePedia]
snp3D : Map Gene to Disease55907
BioCentury BCIQCMAS
ClinGenCMAS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55907
Chemical/Pharm GKB GenePA38519
Clinical trialCMAS
Miscellaneous
canSAR (ICR)CMAS (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMAS
EVEXCMAS
GoPubMedCMAS
iHOPCMAS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:46 CET 2017

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