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CMBL (carboxymethylenebutenolidase homolog)

Identity

Alias (NCBI)JS-1
HGNC (Hugo) CMBL
HGNC Alias symbFLJ23617
HGNC Previous namecarboxymethylenebutenolidase-like (Pseudomonas)
 carboxymethylenebutenolidase homolog (Pseudomonas)
LocusID (NCBI) 134147
Atlas_Id 54220
Location 5p15.2  [Link to chromosome band 5p15]
Location_base_pair Starts at 10277595 and ends at 10307902 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CMBL (5p15.2) / AATF (17q12)CMBL (5p15.2) / DARS2 (1q25.1)CMBL (5p15.2) / DCAF8 (1q23.2)
CMBL (5p15.2) / FAM76A (1p35.3)CMBL (5p15.2) / NDUFAF6 (8q22.1)DENR (12q24.31) / CMBL (5p15.2)
CMBL 5p15.2 / DARS2 1q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CMBL   25090
Cards
Entrez_Gene (NCBI)CMBL    carboxymethylenebutenolidase homolog
AliasesJS-1
GeneCards (Weizmann)CMBL
Ensembl hg19 (Hinxton)ENSG00000164237 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164237 [Gene_View]  ENSG00000164237 [Sequence]  chr5:10277595-10307902 [Contig_View]  CMBL [Vega]
ICGC DataPortalENSG00000164237
TCGA cBioPortalCMBL
AceView (NCBI)CMBL
Genatlas (Paris)CMBL
SOURCE (Princeton)CMBL
Genetics Home Reference (NIH)CMBL
Genomic and cartography
GoldenPath hg38 (UCSC)CMBL  -     chr5:10277595-10307902 -  5p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMBL  -     5p15.2   [Description]    (hg19-Feb_2009)
GoldenPathCMBL - 5p15.2 [CytoView hg19]  CMBL - 5p15.2 [CytoView hg38]
ImmunoBaseENSG00000164237
Genome Data Viewer NCBICMBL [Mapview hg19]  
OMIM613379   
Gene and transcription
Genbank (Entrez)AJ278125 AK074197 AK315390 BC001573 BX647141
RefSeq transcript (Entrez)NM_138809
Consensus coding sequences : CCDS (NCBI)CMBL
Gene ExpressionCMBL [ NCBI-GEO ]   CMBL [ EBI - ARRAY_EXPRESS ]   CMBL [ SEEK ]   CMBL [ MEM ]
Gene Expression Viewer (FireBrowse)CMBL [ Firebrowse - Broad ]
GenevisibleExpression of CMBL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134147
GTEX Portal (Tissue expression)CMBL
Human Protein AtlasENSG00000164237-CMBL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DG6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DG6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DG6
PhosPhoSitePlusQ96DG6
Domains : Interpro (EBI)AB_hydrolase    CMBL    Dienelactn_hydro   
Domain families : Pfam (Sanger)DLH (PF01738)   
Domain families : Pfam (NCBI)pfam01738   
Conserved Domain (NCBI)CMBL
SuperfamilyQ96DG6
AlphaFold pdb e-kbQ96DG6   
Human Protein Atlas [tissue]ENSG00000164237-CMBL [tissue]
HPRD14055
Protein Interaction databases
DIP (DOE-UCLA)Q96DG6
IntAct (EBI)Q96DG6
BioGRIDCMBL
STRING (EMBL)CMBL
ZODIACCMBL
Ontologies - Pathways
QuickGOQ96DG6
Ontology : AmiGOcytosol  xenobiotic metabolic process  hydrolase activity  extracellular exosome  
Ontology : EGO-EBIcytosol  xenobiotic metabolic process  hydrolase activity  extracellular exosome  
NDEx NetworkCMBL
Atlas of Cancer Signalling NetworkCMBL
Wikipedia pathwaysCMBL
Orthology - Evolution
OrthoDB134147
GeneTree (enSembl)ENSG00000164237
Phylogenetic Trees/Animal Genes : TreeFamCMBL
Homologs : HomoloGeneCMBL
Homology/Alignments : Family Browser (UCSC)CMBL
Gene fusions - Rearrangements
Fusion : MitelmanCMBL/DARS2 [5p15.2/1q25.1]  
Fusion : MitelmanCMBL/NDUFAF6 [5p15.2/8q22.1]  
Fusion : QuiverCMBL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMBL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMBL
dbVarCMBL
ClinVarCMBL
MonarchCMBL
1000_GenomesCMBL 
Exome Variant ServerCMBL
GNOMAD BrowserENSG00000164237
Varsome BrowserCMBL
ACMGCMBL variants
VarityQ96DG6
Genomic Variants (DGV)CMBL [DGVbeta]
DECIPHERCMBL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMBL 
Mutations
ICGC Data PortalCMBL 
TCGA Data PortalCMBL 
Broad Tumor PortalCMBL
OASIS PortalCMBL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMBL  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCMBL
Mutations and Diseases : HGMDCMBL
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCMBL
DgiDB (Drug Gene Interaction Database)CMBL
DoCM (Curated mutations)CMBL
CIViC (Clinical Interpretations of Variants in Cancer)CMBL
Cancer3DCMBL
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613379   
Orphanet
DisGeNETCMBL
MedgenCMBL
Genetic Testing Registry CMBL
NextProtQ96DG6 [Medical]
GENETestsCMBL
Target ValidationCMBL
Huge Navigator CMBL [HugePedia]
ClinGenCMBL
Clinical trials, drugs, therapy
MyCancerGenomeCMBL
Protein Interactions : CTDCMBL
Pharm GKB GenePA162382521
PharosQ96DG6
Clinical trialCMBL
Miscellaneous
canSAR (ICR)CMBL
HarmonizomeCMBL
DataMed IndexCMBL
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCMBL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:04:27 CEST 2021

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