Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CMC1 (C-X9-C motif containing 1)

Identity

Alias_namesC3orf68
chromosome 3 open reading frame 68
COX assembly mitochondrial protein 1 homolog (S. cerevisiae)
C-x(9)-C motif containing 1
Alias_symbol (synonym)MGC61571
Other alias
HGNC (Hugo) CMC1
LocusID (NCBI) 152100
Atlas_Id 54221
Location 3p24.1  [Link to chromosome band 3p24]
Location_base_pair Starts at 28241633 and ends at 28319772 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CMC1 (3p24.1) / AZI2 (3p24.1)CMC1 (3p24.1) / GLB1 (3p22.3)CMC1 (3p24.1) / MKLN1 (7q32.3)
CMC1 (3p24.1) / SLC4A7 (3p24.1)CMC1 (3p24.1) / VPS37C (11q12.2)EIF3H (8q23.3) / CMC1 (3p24.1)
CMC1 3p24.1 / GLB1 3p22.3CMC1 3p24.1 / VPS37C 11q12.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMC1   28783
Cards
Entrez_Gene (NCBI)CMC1  152100  C-X9-C motif containing 1
AliasesC3orf68
GeneCards (Weizmann)CMC1
Ensembl hg19 (Hinxton)ENSG00000187118 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187118 [Gene_View]  chr3:28241633-28319772 [Contig_View]  CMC1 [Vega]
ICGC DataPortalENSG00000187118
TCGA cBioPortalCMC1
AceView (NCBI)CMC1
Genatlas (Paris)CMC1
WikiGenes152100
SOURCE (Princeton)CMC1
Genetics Home Reference (NIH)CMC1
Genomic and cartography
GoldenPath hg38 (UCSC)CMC1  -     chr3:28241633-28319772 +  3p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMC1  -     3p24.1   [Description]    (hg19-Feb_2009)
EnsemblCMC1 - 3p24.1 [CytoView hg19]  CMC1 - 3p24.1 [CytoView hg38]
Mapping of homologs : NCBICMC1 [Mapview hg19]  CMC1 [Mapview hg38]
OMIM615166   
Gene and transcription
Genbank (Entrez)AF086095 BC052644 BX648671 CR749370 HQ448584
RefSeq transcript (Entrez)NM_001331185 NM_001331186 NM_001331187 NM_001331189 NM_001331190 NM_182523
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CMC1
Cluster EST : UnigeneHs.444724 [ NCBI ]
CGAP (NCI)Hs.444724
Alternative Splicing GalleryENSG00000187118
Gene ExpressionCMC1 [ NCBI-GEO ]   CMC1 [ EBI - ARRAY_EXPRESS ]   CMC1 [ SEEK ]   CMC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CMC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152100
GTEX Portal (Tissue expression)CMC1
Human Protein AtlasENSG00000187118-CMC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7K0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7K0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7K0
Splice isoforms : SwissVarQ7Z7K0
PhosPhoSitePlusQ7Z7K0
Domaine pattern : Prosite (Expaxy)CHCH (PS51808)   
Domains : Interpro (EBI)Cyt_c_biogenesis_Cmc1-like   
Domain families : Pfam (Sanger)Cmc1 (PF08583)   
Domain families : Pfam (NCBI)pfam08583   
Conserved Domain (NCBI)CMC1
DMDM Disease mutations152100
Blocks (Seattle)CMC1
SuperfamilyQ7Z7K0
Human Protein Atlas [tissue]ENSG00000187118-CMC1 [tissue]
Peptide AtlasQ7Z7K0
HPRD14698
IPIIPI00376478   IPI00790595   IPI00927175   IPI00927432   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7K0
IntAct (EBI)Q7Z7K0
FunCoupENSG00000187118
BioGRIDCMC1
STRING (EMBL)CMC1
ZODIACCMC1
Ontologies - Pathways
QuickGOQ7Z7K0
Ontology : AmiGOmitochondrion  metal ion binding  
Ontology : EGO-EBImitochondrion  metal ion binding  
NDEx NetworkCMC1
Atlas of Cancer Signalling NetworkCMC1
Wikipedia pathwaysCMC1
Orthology - Evolution
OrthoDB152100
GeneTree (enSembl)ENSG00000187118
Phylogenetic Trees/Animal Genes : TreeFamCMC1
HOVERGENQ7Z7K0
HOGENOMQ7Z7K0
Homologs : HomoloGeneCMC1
Homology/Alignments : Family Browser (UCSC)CMC1
Gene fusions - Rearrangements
Fusion : MitelmanCMC1/GLB1 [3p24.1/3p22.3]  
Fusion : MitelmanCMC1/SLC4A7 [3p24.1/3p24.1]  [inv(3)(p24p24)]  
Fusion : MitelmanCMC1/VPS37C [3p24.1/11q12.2]  [t(3;11)(p24;q12)]  
Fusion: TCGACMC1 3p24.1 GLB1 3p22.3 LUAD
Fusion: TCGACMC1 3p24.1 VPS37C 11q12.2 BRCA
Fusion: Tumor Portal CMC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMC1
dbVarCMC1
ClinVarCMC1
1000_GenomesCMC1 
Exome Variant ServerCMC1
ExAC (Exome Aggregation Consortium)ENSG00000187118
GNOMAD BrowserENSG00000187118
Genetic variants : HAPMAP152100
Genomic Variants (DGV)CMC1 [DGVbeta]
DECIPHERCMC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMC1 
Mutations
ICGC Data PortalCMC1 
TCGA Data PortalCMC1 
Broad Tumor PortalCMC1
OASIS PortalCMC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCMC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CMC1
DgiDB (Drug Gene Interaction Database)CMC1
DoCM (Curated mutations)CMC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMC1 (select a term)
intoGenCMC1
Cancer3DCMC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615166   
Orphanet
MedgenCMC1
Genetic Testing Registry CMC1
NextProtQ7Z7K0 [Medical]
TSGene152100
GENETestsCMC1
Target ValidationCMC1
Huge Navigator CMC1 [HugePedia]
snp3D : Map Gene to Disease152100
BioCentury BCIQCMC1
ClinGenCMC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152100
Chemical/Pharm GKB GenePA162382538
Clinical trialCMC1
Miscellaneous
canSAR (ICR)CMC1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMC1
EVEXCMC1
GoPubMedCMC1
iHOPCMC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:45:12 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.