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CMC2 (C-X9-C motif containing 2)

Identity

Alias_namesC16orf61
chromosome 16 open reading frame 61
COX assembly mitochondrial protein 2 homolog (S. cerevisiae)
C-x(9)-C motif containing 2
Alias_symbol (synonym)DC13
MGC45036
Other alias2310061C15Rik
HGNC (Hugo) CMC2
LocusID (NCBI) 56942
Atlas_Id 52499
Location 16q23.2  [Link to chromosome band 16q23]
Location_base_pair Starts at 80975802 and ends at 81006897 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C10orf88 (10q26.13) / CMC2 (16q23.2)CMC2 (16q23.2) / PZP (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMC2   24447
Cards
Entrez_Gene (NCBI)CMC2  56942  C-X9-C motif containing 2
Aliases2310061C15Rik; C16orf61; DC13
GeneCards (Weizmann)CMC2
Ensembl hg19 (Hinxton)ENSG00000103121 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103121 [Gene_View]  chr16:80975802-81006897 [Contig_View]  CMC2 [Vega]
ICGC DataPortalENSG00000103121
TCGA cBioPortalCMC2
AceView (NCBI)CMC2
Genatlas (Paris)CMC2
WikiGenes56942
SOURCE (Princeton)CMC2
Genetics Home Reference (NIH)CMC2
Genomic and cartography
GoldenPath hg38 (UCSC)CMC2  -     chr16:80975802-81006897 -  16q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMC2  -     16q23.2   [Description]    (hg19-Feb_2009)
EnsemblCMC2 - 16q23.2 [CytoView hg19]  CMC2 - 16q23.2 [CytoView hg38]
Mapping of homologs : NCBICMC2 [Mapview hg19]  CMC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF201935 AK123193 BC032631 DQ890780 DQ893939
RefSeq transcript (Entrez)NM_020188
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CMC2
Cluster EST : UnigeneHs.55028 [ NCBI ]
CGAP (NCI)Hs.55028
Alternative Splicing GalleryENSG00000103121
Gene ExpressionCMC2 [ NCBI-GEO ]   CMC2 [ EBI - ARRAY_EXPRESS ]   CMC2 [ SEEK ]   CMC2 [ MEM ]
Gene Expression Viewer (FireBrowse)CMC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56942
GTEX Portal (Tissue expression)CMC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRP2
Splice isoforms : SwissVarQ9NRP2
PhosPhoSitePlusQ9NRP2
Domaine pattern : Prosite (Expaxy)CHCH (PS51808)   
Domains : Interpro (EBI)Cyt_c_biogenesis_Cmc1-like   
Domain families : Pfam (Sanger)Cmc1 (PF08583)   
Domain families : Pfam (NCBI)pfam08583   
Conserved Domain (NCBI)CMC2
DMDM Disease mutations56942
Blocks (Seattle)CMC2
SuperfamilyQ9NRP2
Human Protein AtlasENSG00000103121
Peptide AtlasQ9NRP2
HPRD16783
IPIIPI00024619   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRP2
IntAct (EBI)Q9NRP2
FunCoupENSG00000103121
BioGRIDCMC2
STRING (EMBL)CMC2
ZODIACCMC2
Ontologies - Pathways
QuickGOQ9NRP2
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkCMC2
Atlas of Cancer Signalling NetworkCMC2
Wikipedia pathwaysCMC2
Orthology - Evolution
OrthoDB56942
GeneTree (enSembl)ENSG00000103121
Phylogenetic Trees/Animal Genes : TreeFamCMC2
HOVERGENQ9NRP2
HOGENOMQ9NRP2
Homologs : HomoloGeneCMC2
Homology/Alignments : Family Browser (UCSC)CMC2
Gene fusions - Rearrangements
Fusion : MitelmanCMC2/PZP [16q23.2/12p13.31]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMC2
dbVarCMC2
ClinVarCMC2
1000_GenomesCMC2 
Exome Variant ServerCMC2
ExAC (Exome Aggregation Consortium)CMC2 (select the gene name)
Genetic variants : HAPMAP56942
Genomic Variants (DGV)CMC2 [DGVbeta]
DECIPHERCMC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMC2 
Mutations
ICGC Data PortalCMC2 
TCGA Data PortalCMC2 
Broad Tumor PortalCMC2
OASIS PortalCMC2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCMC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMC2
DgiDB (Drug Gene Interaction Database)CMC2
DoCM (Curated mutations)CMC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMC2 (select a term)
intoGenCMC2
Cancer3DCMC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCMC2
Genetic Testing Registry CMC2
NextProtQ9NRP2 [Medical]
TSGene56942
GENETestsCMC2
Target ValidationCMC2
Huge Navigator CMC2 [HugePedia]
snp3D : Map Gene to Disease56942
BioCentury BCIQCMC2
ClinGenCMC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56942
Chemical/Pharm GKB GenePA143485398
Clinical trialCMC2
Miscellaneous
canSAR (ICR)CMC2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMC2
EVEXCMC2
GoPubMedCMC2
iHOPCMC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:51 CEST 2017

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