Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CMC4 (C-X9-C motif containing 4)

Identity

Alias_namesisoform p8
MTCP1
MTCP1NB
Alias_symbol (synonym)P8MTCP1
p8
Other aliasC6.1B
MTCP1B
p8MTCP1
HGNC (Hugo) CMC4
LocusID (NCBI) 100272147
Atlas_Id 56529
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 155061625 and ends at 155071272 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CXADR (21q21.1) / CMC4 (Xq28)TRA () / CMC4 (Xq28)TRB () / CMC4 (Xq28)
TRBV20OR9-2 () / CMC4 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMC4   35428
Cards
Entrez_Gene (NCBI)CMC4  100272147  C-X9-C motif containing 4
AliasesC6.1B; MTCP1; MTCP1B; MTCP1NB; 
p8; p8MTCP1
GeneCards (Weizmann)CMC4
Ensembl hg19 (Hinxton)ENSG00000182712 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182712 [Gene_View]  chrX:155061625-155071272 [Contig_View]  CMC4 [Vega]
ICGC DataPortalENSG00000182712
TCGA cBioPortalCMC4
AceView (NCBI)CMC4
Genatlas (Paris)CMC4
WikiGenes100272147
SOURCE (Princeton)CMC4
Genetics Home Reference (NIH)CMC4
Genomic and cartography
GoldenPath hg38 (UCSC)CMC4  -     chrX:155061625-155071272 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMC4  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblCMC4 - Xq28 [CytoView hg19]  CMC4 - Xq28 [CytoView hg38]
Mapping of homologs : NCBICMC4 [Mapview hg19]  CMC4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AM393456 BC002600 BG707795 BT006749 X64644
RefSeq transcript (Entrez)NM_001018024
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CMC4
Cluster EST : UnigeneHs.6917 [ NCBI ]
CGAP (NCI)Hs.6917
Alternative Splicing GalleryENSG00000182712
Gene ExpressionCMC4 [ NCBI-GEO ]   CMC4 [ EBI - ARRAY_EXPRESS ]   CMC4 [ SEEK ]   CMC4 [ MEM ]
Gene Expression Viewer (FireBrowse)CMC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100272147
GTEX Portal (Tissue expression)CMC4
Human Protein AtlasENSG00000182712-CMC4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56277   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56277  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56277
Splice isoforms : SwissVarP56277
PhosPhoSitePlusP56277
Domaine pattern : Prosite (Expaxy)CHCH (PS51808)   
Domains : Interpro (EBI)Cys_alpha_HP_mot_SF    MTCP1   
Domain families : Pfam (Sanger)MTCP1 (PF08991)   
Domain families : Pfam (NCBI)pfam08991   
Conserved Domain (NCBI)CMC4
DMDM Disease mutations100272147
Blocks (Seattle)CMC4
PDB (SRS)1EI0    1HP8    2HP8   
PDB (PDBSum)1EI0    1HP8    2HP8   
PDB (IMB)1EI0    1HP8    2HP8   
PDB (RSDB)1EI0    1HP8    2HP8   
Structural Biology KnowledgeBase1EI0    1HP8    2HP8   
SCOP (Structural Classification of Proteins)1EI0    1HP8    2HP8   
CATH (Classification of proteins structures)1EI0    1HP8    2HP8   
SuperfamilyP56277
Human Protein Atlas [tissue]ENSG00000182712-CMC4 [tissue]
Peptide AtlasP56277
IPIIPI00446798   
Protein Interaction databases
DIP (DOE-UCLA)P56277
IntAct (EBI)P56277
FunCoupENSG00000182712
BioGRIDCMC4
STRING (EMBL)CMC4
ZODIACCMC4
Ontologies - Pathways
QuickGOP56277
Ontology : AmiGOmitochondrion  mitochondrial intermembrane space  cell proliferation  
Ontology : EGO-EBImitochondrion  mitochondrial intermembrane space  cell proliferation  
NDEx NetworkCMC4
Atlas of Cancer Signalling NetworkCMC4
Wikipedia pathwaysCMC4
Orthology - Evolution
OrthoDB100272147
GeneTree (enSembl)ENSG00000182712
Phylogenetic Trees/Animal Genes : TreeFamCMC4
HOVERGENP56277
HOGENOMP56277
Homologs : HomoloGeneCMC4
Homology/Alignments : Family Browser (UCSC)CMC4
Gene fusions - Rearrangements
Tumor Fusion PortalCMC4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMC4
dbVarCMC4
ClinVarCMC4
1000_GenomesCMC4 
Exome Variant ServerCMC4
ExAC (Exome Aggregation Consortium)ENSG00000182712
GNOMAD BrowserENSG00000182712
Genetic variants : HAPMAP100272147
Genomic Variants (DGV)CMC4 [DGVbeta]
DECIPHERCMC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMC4 
Mutations
ICGC Data PortalCMC4 
TCGA Data PortalCMC4 
Broad Tumor PortalCMC4
OASIS PortalCMC4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCMC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CMC4
DgiDB (Drug Gene Interaction Database)CMC4
DoCM (Curated mutations)CMC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMC4 (select a term)
intoGenCMC4
Cancer3DCMC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCMC4
MedgenCMC4
Genetic Testing Registry CMC4
NextProtP56277 [Medical]
TSGene100272147
GENETestsCMC4
Target ValidationCMC4
Huge Navigator CMC4 [HugePedia]
snp3D : Map Gene to Disease100272147
BioCentury BCIQCMC4
ClinGenCMC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100272147
Chemical/Pharm GKB GenePA164723191
Clinical trialCMC4
Miscellaneous
canSAR (ICR)CMC4 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMC4
EVEXCMC4
GoPubMedCMC4
iHOPCMC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:08:13 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.