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CMIP (c-Maf inducing protein)

Identity

Other aliasTCMIP
HGNC (Hugo) CMIP
LocusID (NCBI) 80790
Atlas_Id 52816
Location 16q23.2  [Link to chromosome band 16q23]
Location_base_pair Starts at 81495349 and ends at 81711763 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CMIP (16q23.2) / BCO1 (16q23.2)CMIP (16q23.2) / CCDC183 (9q34.3)CMIP (16q23.2) / CDYL2 (16q23.2)
CMIP (16q23.2) / CMIP (16q23.2)CMIP (16q23.2) / COTL1 (16q24.1)CMIP (16q23.2) / DYNLRB2 (16q23.2)
CMIP (16q23.2) / SLC26A11 (17q25.3)CMIP (16q23.2) / SSBP1 (7q34)CMIP (16q23.2) / TPX2 (20q11.21)
KIAA1429 (8q22.1) / CMIP (16q23.2)NADK2 (5p13.2) / CMIP (16q23.2)CMIP 16q23.2 BCMO1
CMIP 16q23.2 / CDYL2 16q23.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMIP   24319
Cards
Entrez_Gene (NCBI)CMIP  80790  c-Maf inducing protein
AliasesTCMIP
GeneCards (Weizmann)CMIP
Ensembl hg19 (Hinxton)ENSG00000153815 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153815 [Gene_View]  chr16:81495349-81711763 [Contig_View]  CMIP [Vega]
ICGC DataPortalENSG00000153815
TCGA cBioPortalCMIP
AceView (NCBI)CMIP
Genatlas (Paris)CMIP
WikiGenes80790
SOURCE (Princeton)CMIP
Genetics Home Reference (NIH)CMIP
Genomic and cartography
GoldenPath hg38 (UCSC)CMIP  -     chr16:81495349-81711763 +  16q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMIP  -     16q23.2   [Description]    (hg19-Feb_2009)
EnsemblCMIP - 16q23.2 [CytoView hg19]  CMIP - 16q23.2 [CytoView hg38]
Mapping of homologs : NCBICMIP [Mapview hg19]  CMIP [Mapview hg38]
OMIM610112   
Gene and transcription
Genbank (Entrez)AB051481 AK096598 AK127550 AK304418 AK308869
RefSeq transcript (Entrez)NM_030629 NM_198390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CMIP
Cluster EST : UnigeneHs.662343 [ NCBI ]
CGAP (NCI)Hs.662343
Alternative Splicing GalleryENSG00000153815
Gene ExpressionCMIP [ NCBI-GEO ]   CMIP [ EBI - ARRAY_EXPRESS ]   CMIP [ SEEK ]   CMIP [ MEM ]
Gene Expression Viewer (FireBrowse)CMIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80790
GTEX Portal (Tissue expression)CMIP
Human Protein AtlasENSG00000153815-CMIP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY22
Splice isoforms : SwissVarQ8IY22
PhosPhoSitePlusQ8IY22
Domains : Interpro (EBI)L_dom-like    PH_dom-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CMIP
DMDM Disease mutations80790
Blocks (Seattle)CMIP
SuperfamilyQ8IY22
Human Protein Atlas [tissue]ENSG00000153815-CMIP [tissue]
Peptide AtlasQ8IY22
HPRD10839
IPIIPI00413562   IPI00641967   IPI01018846   IPI01015471   IPI00028438   
Protein Interaction databases
DIP (DOE-UCLA)Q8IY22
IntAct (EBI)Q8IY22
FunCoupENSG00000153815
BioGRIDCMIP
STRING (EMBL)CMIP
ZODIACCMIP
Ontologies - Pathways
QuickGOQ8IY22
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  
NDEx NetworkCMIP
Atlas of Cancer Signalling NetworkCMIP
Wikipedia pathwaysCMIP
Orthology - Evolution
OrthoDB80790
GeneTree (enSembl)ENSG00000153815
Phylogenetic Trees/Animal Genes : TreeFamCMIP
HOVERGENQ8IY22
HOGENOMQ8IY22
Homologs : HomoloGeneCMIP
Homology/Alignments : Family Browser (UCSC)CMIP
Gene fusions - Rearrangements
Fusion : MitelmanCMIP/BCO1 [16q23.2/16q23.2]  
Fusion : MitelmanCMIP/CDYL2 [16q23.2/16q23.2]  [t(16;16)(q23;q23)]  
Fusion: TCGA_MDACCCMIP 16q23.2 BCMO1 BLCA
Fusion: TCGA_MDACCCMIP 16q23.2 CDYL2 16q23.2 BRCA
Tumor Fusion PortalCMIP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMIP
dbVarCMIP
ClinVarCMIP
1000_GenomesCMIP 
Exome Variant ServerCMIP
ExAC (Exome Aggregation Consortium)ENSG00000153815
GNOMAD BrowserENSG00000153815
Genetic variants : HAPMAP80790
Genomic Variants (DGV)CMIP [DGVbeta]
DECIPHERCMIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMIP 
Mutations
ICGC Data PortalCMIP 
TCGA Data PortalCMIP 
Broad Tumor PortalCMIP
OASIS PortalCMIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMIP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCMIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMIP
DgiDB (Drug Gene Interaction Database)CMIP
DoCM (Curated mutations)CMIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMIP (select a term)
intoGenCMIP
Cancer3DCMIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610112   
Orphanet
DisGeNETCMIP
MedgenCMIP
Genetic Testing Registry CMIP
NextProtQ8IY22 [Medical]
TSGene80790
GENETestsCMIP
Target ValidationCMIP
Huge Navigator CMIP [HugePedia]
snp3D : Map Gene to Disease80790
BioCentury BCIQCMIP
ClinGenCMIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80790
Chemical/Pharm GKB GenePA166048959
Clinical trialCMIP
Miscellaneous
canSAR (ICR)CMIP (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMIP
EVEXCMIP
GoPubMedCMIP
iHOPCMIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:08:14 CET 2017

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