Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CMPK2 (cytidine/uridine monophosphate kinase 2)

Identity

Alias_namescytidine monophosphate (UMP-CMP) kinase 2, mitochondrial
Alias_symbol (synonym)TYKi
UMP-CMPK2
NDK
Other aliasTMPK2
HGNC (Hugo) CMPK2
LocusID (NCBI) 129607
Atlas_Id 61922
Location 2p25.2  [Link to chromosome band 2p25]
Location_base_pair Starts at 6850650 and ends at 6865819 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMPK2   27015
Cards
Entrez_Gene (NCBI)CMPK2  129607  cytidine/uridine monophosphate kinase 2
AliasesNDK; TMPK2; TYKi; UMP-CMPK2
GeneCards (Weizmann)CMPK2
Ensembl hg19 (Hinxton)ENSG00000134326 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134326 [Gene_View]  chr2:6850650-6865819 [Contig_View]  CMPK2 [Vega]
ICGC DataPortalENSG00000134326
TCGA cBioPortalCMPK2
AceView (NCBI)CMPK2
Genatlas (Paris)CMPK2
WikiGenes129607
SOURCE (Princeton)CMPK2
Genetics Home Reference (NIH)CMPK2
Genomic and cartography
GoldenPath hg38 (UCSC)CMPK2  -     chr2:6850650-6865819 -  2p25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMPK2  -     2p25.2   [Description]    (hg19-Feb_2009)
EnsemblCMPK2 - 2p25.2 [CytoView hg19]  CMPK2 - 2p25.2 [CytoView hg38]
Mapping of homologs : NCBICMPK2 [Mapview hg19]  CMPK2 [Mapview hg38]
OMIM611787   
Gene and transcription
Genbank (Entrez)AK127983 AK308509 BC016969 BC089425 BC132821
RefSeq transcript (Entrez)NM_001256477 NM_001256478 NM_207315
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CMPK2
Cluster EST : UnigeneHs.7155 [ NCBI ]
CGAP (NCI)Hs.7155
Alternative Splicing GalleryENSG00000134326
Gene ExpressionCMPK2 [ NCBI-GEO ]   CMPK2 [ EBI - ARRAY_EXPRESS ]   CMPK2 [ SEEK ]   CMPK2 [ MEM ]
Gene Expression Viewer (FireBrowse)CMPK2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129607
GTEX Portal (Tissue expression)CMPK2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5EBM0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5EBM0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5EBM0
Splice isoforms : SwissVarQ5EBM0
Catalytic activity : Enzyme2.7.4.14 [ Enzyme-Expasy ]   2.7.4.142.7.4.14 [ IntEnz-EBI ]   2.7.4.14 [ BRENDA ]   2.7.4.14 [ KEGG ]   
PhosPhoSitePlusQ5EBM0
Domains : Interpro (EBI)P-loop_NTPase    UMP-CMP_kinase_mit   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CMPK2
DMDM Disease mutations129607
Blocks (Seattle)CMPK2
SuperfamilyQ5EBM0
Human Protein AtlasENSG00000134326
Peptide AtlasQ5EBM0
HPRD11233
IPIIPI00410404   IPI00884425   IPI00830006   IPI00890710   
Protein Interaction databases
DIP (DOE-UCLA)Q5EBM0
IntAct (EBI)Q5EBM0
FunCoupENSG00000134326
BioGRIDCMPK2
STRING (EMBL)CMPK2
ZODIACCMPK2
Ontologies - Pathways
QuickGOQ5EBM0
Ontology : AmiGOcytidylate kinase activity  nucleoside diphosphate kinase activity  thymidylate kinase activity  ATP binding  mitochondrion  nucleoside diphosphate phosphorylation  dUDP biosynthetic process  dTDP biosynthetic process  dTTP biosynthetic process  nucleoside triphosphate biosynthetic process  UMP kinase activity  cellular response to lipopolysaccharide  
Ontology : EGO-EBIcytidylate kinase activity  nucleoside diphosphate kinase activity  thymidylate kinase activity  ATP binding  mitochondrion  nucleoside diphosphate phosphorylation  dUDP biosynthetic process  dTDP biosynthetic process  dTTP biosynthetic process  nucleoside triphosphate biosynthetic process  UMP kinase activity  cellular response to lipopolysaccharide  
Pathways : KEGGPyrimidine metabolism   
NDEx NetworkCMPK2
Atlas of Cancer Signalling NetworkCMPK2
Wikipedia pathwaysCMPK2
Orthology - Evolution
OrthoDB129607
GeneTree (enSembl)ENSG00000134326
Phylogenetic Trees/Animal Genes : TreeFamCMPK2
HOVERGENQ5EBM0
HOGENOMQ5EBM0
Homologs : HomoloGeneCMPK2
Homology/Alignments : Family Browser (UCSC)CMPK2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMPK2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMPK2
dbVarCMPK2
ClinVarCMPK2
1000_GenomesCMPK2 
Exome Variant ServerCMPK2
ExAC (Exome Aggregation Consortium)CMPK2 (select the gene name)
Genetic variants : HAPMAP129607
Genomic Variants (DGV)CMPK2 [DGVbeta]
DECIPHERCMPK2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMPK2 
Mutations
ICGC Data PortalCMPK2 
TCGA Data PortalCMPK2 
Broad Tumor PortalCMPK2
OASIS PortalCMPK2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMPK2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCMPK2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMPK2
DgiDB (Drug Gene Interaction Database)CMPK2
DoCM (Curated mutations)CMPK2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMPK2 (select a term)
intoGenCMPK2
Cancer3DCMPK2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611787   
Orphanet
MedgenCMPK2
Genetic Testing Registry CMPK2
NextProtQ5EBM0 [Medical]
TSGene129607
GENETestsCMPK2
Target ValidationCMPK2
Huge Navigator CMPK2 [HugePedia]
snp3D : Map Gene to Disease129607
BioCentury BCIQCMPK2
ClinGenCMPK2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129607
Chemical/Pharm GKB GenePA162382556
Clinical trialCMPK2
Miscellaneous
canSAR (ICR)CMPK2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMPK2
EVEXCMPK2
GoPubMedCMPK2
iHOPCMPK2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:59 CEST 2017

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