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CMSS1 (cms1 ribosomal small subunit homolog)

Identity

Alias (NCBI)C3orf26
HGNC (Hugo) CMSS1
HGNC Alias symbMGC4308
HGNC Previous nameC3orf26
HGNC Previous namechromosome 3 open reading frame 26
LocusID (NCBI) 84319
Atlas_Id 61923
Location 3q12.1  [Link to chromosome band 3q12]
Location_base_pair Starts at 99817862 and ends at 100181732 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CMSS1 (3q12.1)::XRRA1 (11q13.4)TBC1D23 (3q12.1)::CMSS1 (3q12.1)TMEM45A (3q12.2)::CMSS1 (3q12.1)
ZBTB20 (3q13.31)::CMSS1 (3q12.1)ZNF844 (19p13.2)::CMSS1 (3q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CMSS1   28666
Cards
Entrez_Gene (NCBI)CMSS1    cms1 ribosomal small subunit homolog
AliasesC3orf26
GeneCards (Weizmann)CMSS1
Ensembl hg19 (Hinxton)ENSG00000184220 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184220 [Gene_View]  ENSG00000184220 [Sequence]  chr3:99817862-100181732 [Contig_View]  CMSS1 [Vega]
ICGC DataPortalENSG00000184220
TCGA cBioPortalCMSS1
AceView (NCBI)CMSS1
Genatlas (Paris)CMSS1
SOURCE (Princeton)CMSS1
Genetics Home Reference (NIH)CMSS1
Genomic and cartography
GoldenPath hg38 (UCSC)CMSS1  -     chr3:99817862-100181732 +  3q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMSS1  -     3q12.1   [Description]    (hg19-Feb_2009)
GoldenPathCMSS1 - 3q12.1 [CytoView hg19]  CMSS1 - 3q12.1 [CytoView hg38]
ImmunoBaseENSG00000184220
Genome Data Viewer NCBICMSS1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK124387 AK291392 AK300704 AK312483 BC006475
RefSeq transcript (Entrez)NM_001167924 NM_032359
Consensus coding sequences : CCDS (NCBI)CMSS1
Gene ExpressionCMSS1 [ NCBI-GEO ]   CMSS1 [ EBI - ARRAY_EXPRESS ]   CMSS1 [ SEEK ]   CMSS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CMSS1 [ Firebrowse - Broad ]
GenevisibleExpression of CMSS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84319
GTEX Portal (Tissue expression)CMSS1
Human Protein AtlasENSG00000184220-CMSS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ75
PhosPhoSitePlusQ9BQ75
Domains : Interpro (EBI)Cms1    P-loop_NTPase   
Domain families : Pfam (Sanger)CMS1 (PF14617)   
Domain families : Pfam (NCBI)pfam14617   
Conserved Domain (NCBI)CMSS1
SuperfamilyQ9BQ75
AlphaFold pdb e-kbQ9BQ75   
Human Protein Atlas [tissue]ENSG00000184220-CMSS1 [tissue]
HPRD11351
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ75
IntAct (EBI)Q9BQ75
BioGRIDCMSS1
STRING (EMBL)CMSS1
ZODIACCMSS1
Ontologies - Pathways
QuickGOQ9BQ75
Ontology : AmiGORNA binding  protein binding  
Ontology : EGO-EBIRNA binding  protein binding  
NDEx NetworkCMSS1
Atlas of Cancer Signalling NetworkCMSS1
Wikipedia pathwaysCMSS1
Orthology - Evolution
OrthoDB84319
GeneTree (enSembl)ENSG00000184220
Phylogenetic Trees/Animal Genes : TreeFamCMSS1
Homologs : HomoloGeneCMSS1
Homology/Alignments : Family Browser (UCSC)CMSS1
Gene fusions - Rearrangements
Fusion : QuiverCMSS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMSS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMSS1
dbVarCMSS1
ClinVarCMSS1
MonarchCMSS1
1000_GenomesCMSS1 
Exome Variant ServerCMSS1
GNOMAD BrowserENSG00000184220
Varsome BrowserCMSS1
ACMGCMSS1 variants
VarityQ9BQ75
Genomic Variants (DGV)CMSS1 [DGVbeta]
DECIPHERCMSS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMSS1 
Mutations
ICGC Data PortalCMSS1 
TCGA Data PortalCMSS1 
Broad Tumor PortalCMSS1
OASIS PortalCMSS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMSS1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCMSS1
Mutations and Diseases : HGMDCMSS1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCMSS1
DgiDB (Drug Gene Interaction Database)CMSS1
DoCM (Curated mutations)CMSS1
CIViC (Clinical Interpretations of Variants in Cancer)CMSS1
Cancer3DCMSS1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCMSS1
MedgenCMSS1
Genetic Testing Registry CMSS1
NextProtQ9BQ75 [Medical]
GENETestsCMSS1
Target ValidationCMSS1
Huge Navigator CMSS1 [HugePedia]
ClinGenCMSS1
Clinical trials, drugs, therapy
MyCancerGenomeCMSS1
Protein Interactions : CTDCMSS1
Pharm GKB GenePA142672387
PharosQ9BQ75
Clinical trialCMSS1
Miscellaneous
canSAR (ICR)CMSS1
HarmonizomeCMSS1
ARCHS4CMSS1
DataMed IndexCMSS1
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCMSS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:15:06 CET 2022

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