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CMSS1 (cms1 ribosomal small subunit homolog (yeast))

Identity

Alias_namesC3orf26
chromosome 3 open reading frame 26
Alias_symbol (synonym)MGC4308
Other alias
HGNC (Hugo) CMSS1
LocusID (NCBI) 84319
Atlas_Id 61923
Location 3q12.1  [Link to chromosome band 3q12]
Location_base_pair Starts at 100114930 and ends at 100178632 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CMSS1 (3q12.1) / XRRA1 (11q13.4)TBC1D23 (3q12.1) / CMSS1 (3q12.1)TMEM45A (3q12.2) / CMSS1 (3q12.1)
ZBTB20 (3q13.31) / CMSS1 (3q12.1)ZNF844 (19p13.2) / CMSS1 (3q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMSS1   28666
Cards
Entrez_Gene (NCBI)CMSS1  84319  cms1 ribosomal small subunit homolog (yeast)
AliasesC3orf26
GeneCards (Weizmann)CMSS1
Ensembl hg19 (Hinxton)ENSG00000184220 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184220 [Gene_View]  chr3:100114930-100178632 [Contig_View]  CMSS1 [Vega]
ICGC DataPortalENSG00000184220
TCGA cBioPortalCMSS1
AceView (NCBI)CMSS1
Genatlas (Paris)CMSS1
WikiGenes84319
SOURCE (Princeton)CMSS1
Genetics Home Reference (NIH)CMSS1
Genomic and cartography
GoldenPath hg38 (UCSC)CMSS1  -     chr3:100114930-100178632 +  3q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMSS1  -     3q12.1   [Description]    (hg19-Feb_2009)
EnsemblCMSS1 - 3q12.1 [CytoView hg19]  CMSS1 - 3q12.1 [CytoView hg38]
Mapping of homologs : NCBICMSS1 [Mapview hg19]  CMSS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124387 AK291392 AK300704 AK312483 BC006475
RefSeq transcript (Entrez)NM_001167924 NM_032359
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CMSS1
Cluster EST : UnigeneHs.581320 [ NCBI ]
CGAP (NCI)Hs.581320
Alternative Splicing GalleryENSG00000184220
Gene ExpressionCMSS1 [ NCBI-GEO ]   CMSS1 [ EBI - ARRAY_EXPRESS ]   CMSS1 [ SEEK ]   CMSS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CMSS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84319
GTEX Portal (Tissue expression)CMSS1
Human Protein AtlasENSG00000184220-CMSS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ75
Splice isoforms : SwissVarQ9BQ75
PhosPhoSitePlusQ9BQ75
Domains : Interpro (EBI)Cms1    P-loop_NTPase   
Domain families : Pfam (Sanger)CMS1 (PF14617)   
Domain families : Pfam (NCBI)pfam14617   
Conserved Domain (NCBI)CMSS1
DMDM Disease mutations84319
Blocks (Seattle)CMSS1
SuperfamilyQ9BQ75
Human Protein Atlas [tissue]ENSG00000184220-CMSS1 [tissue]
Peptide AtlasQ9BQ75
HPRD11351
IPIIPI00031679   IPI00794701   IPI00953205   IPI00946058   IPI00945551   IPI00946594   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ75
IntAct (EBI)Q9BQ75
FunCoupENSG00000184220
BioGRIDCMSS1
STRING (EMBL)CMSS1
ZODIACCMSS1
Ontologies - Pathways
QuickGOQ9BQ75
Ontology : AmiGORNA binding  nucleus  90S preribosome  
Ontology : EGO-EBIRNA binding  nucleus  90S preribosome  
NDEx NetworkCMSS1
Atlas of Cancer Signalling NetworkCMSS1
Wikipedia pathwaysCMSS1
Orthology - Evolution
OrthoDB84319
GeneTree (enSembl)ENSG00000184220
Phylogenetic Trees/Animal Genes : TreeFamCMSS1
HOVERGENQ9BQ75
HOGENOMQ9BQ75
Homologs : HomoloGeneCMSS1
Homology/Alignments : Family Browser (UCSC)CMSS1
Gene fusions - Rearrangements
Fusion: Tumor Portal CMSS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMSS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMSS1
dbVarCMSS1
ClinVarCMSS1
1000_GenomesCMSS1 
Exome Variant ServerCMSS1
ExAC (Exome Aggregation Consortium)ENSG00000184220
GNOMAD BrowserENSG00000184220
Genetic variants : HAPMAP84319
Genomic Variants (DGV)CMSS1 [DGVbeta]
DECIPHERCMSS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMSS1 
Mutations
ICGC Data PortalCMSS1 
TCGA Data PortalCMSS1 
Broad Tumor PortalCMSS1
OASIS PortalCMSS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCMSS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMSS1
DgiDB (Drug Gene Interaction Database)CMSS1
DoCM (Curated mutations)CMSS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMSS1 (select a term)
intoGenCMSS1
Cancer3DCMSS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCMSS1
Genetic Testing Registry CMSS1
NextProtQ9BQ75 [Medical]
TSGene84319
GENETestsCMSS1
Target ValidationCMSS1
Huge Navigator CMSS1 [HugePedia]
snp3D : Map Gene to Disease84319
BioCentury BCIQCMSS1
ClinGenCMSS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84319
Chemical/Pharm GKB GenePA142672387
Clinical trialCMSS1
Miscellaneous
canSAR (ICR)CMSS1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMSS1
EVEXCMSS1
GoPubMedCMSS1
iHOPCMSS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:42:54 CET 2017

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