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CMTM1 (CKLF like MARVEL transmembrane domain containing 1)

Identity

Alias_namesCKLFSF1
chemokine-like factor super family 1
chemokine-like factor superfamily 1
CKLF-like MARVEL transmembrane domain containing 1
Alias_symbol (synonym)CKLFH1a
CKLFH
Other aliasCKLFH1
HGNC (Hugo) CMTM1
LocusID (NCBI) 113540
Atlas_Id 55507
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 66600350 and ends at 66613038 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMTM1   19172
Cards
Entrez_Gene (NCBI)CMTM1  113540  CKLF like MARVEL transmembrane domain containing 1
AliasesCKLFH; CKLFH1; CKLFSF1
GeneCards (Weizmann)CMTM1
Ensembl hg19 (Hinxton)ENSG00000089505 [Gene_View]  chr16:66600350-66613038 [Contig_View]  CMTM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000089505 [Gene_View]  chr16:66600350-66613038 [Contig_View]  CMTM1 [Vega]
ICGC DataPortalENSG00000089505
TCGA cBioPortalCMTM1
AceView (NCBI)CMTM1
Genatlas (Paris)CMTM1
WikiGenes113540
SOURCE (Princeton)CMTM1
Genetics Home Reference (NIH)CMTM1
Genomic and cartography
GoldenPath hg19 (UCSC)CMTM1  -     chr16:66600350-66613038 +  16q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CMTM1  -     16q21   [Description]    (hg38-Dec_2013)
EnsemblCMTM1 - 16q21 [CytoView hg19]  CMTM1 - 16q21 [CytoView hg38]
Mapping of homologs : NCBICMTM1 [Mapview hg19]  CMTM1 [Mapview hg38]
OMIM607884   
Gene and transcription
Genbank (Entrez)AF278576 AF278577 AY174118 AY174119 AY174120
RefSeq transcript (Entrez)NM_052999 NM_181268 NM_181269 NM_181270 NM_181271 NM_181272 NM_181283 NM_181285 NM_181286 NM_181287 NM_181288 NM_181289 NM_181290 NM_181292 NM_181293 NM_181294 NM_181295 NM_181296 NM_181297 NM_181298 NM_181299 NM_181300 NM_181301
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)CMTM1
Cluster EST : UnigeneHs.722591 [ NCBI ]
CGAP (NCI)Hs.722591
Alternative Splicing GalleryENSG00000089505
Gene ExpressionCMTM1 [ NCBI-GEO ]   CMTM1 [ EBI - ARRAY_EXPRESS ]   CMTM1 [ SEEK ]   CMTM1 [ MEM ]
Gene Expression Viewer (FireBrowse)CMTM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113540
GTEX Portal (Tissue expression)CMTM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZ96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZ96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZ96
Splice isoforms : SwissVarQ8IZ96
PhosPhoSitePlusQ8IZ96
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CMTM1
DMDM Disease mutations113540
Blocks (Seattle)CMTM1
SuperfamilyQ8IZ96
Human Protein AtlasENSG00000089505
Peptide AtlasQ8IZ96
HPRD07433
IPIIPI00477707   IPI00217932   IPI00217931   IPI00217929   IPI00217928   IPI00216669   IPI00217927   IPI00329786   IPI00940105   IPI00328305   IPI00217936   IPI00328304   IPI00328303   IPI00216664   IPI00216665   IPI00328165   IPI00816274   IPI00848271   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZ96
IntAct (EBI)Q8IZ96
FunCoupENSG00000089505
BioGRIDCMTM1
STRING (EMBL)CMTM1
ZODIACCMTM1
Ontologies - Pathways
QuickGOQ8IZ96
Ontology : AmiGOcytokine activity  extracellular space  chemotaxis  integral component of membrane  
Ontology : EGO-EBIcytokine activity  extracellular space  chemotaxis  integral component of membrane  
NDEx NetworkCMTM1
Atlas of Cancer Signalling NetworkCMTM1
Wikipedia pathwaysCMTM1
Orthology - Evolution
OrthoDB113540
GeneTree (enSembl)ENSG00000089505
Phylogenetic Trees/Animal Genes : TreeFamCMTM1
HOVERGENQ8IZ96
HOGENOMQ8IZ96
Homologs : HomoloGeneCMTM1
Homology/Alignments : Family Browser (UCSC)CMTM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMTM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMTM1
dbVarCMTM1
ClinVarCMTM1
1000_GenomesCMTM1 
Exome Variant ServerCMTM1
ExAC (Exome Aggregation Consortium)CMTM1 (select the gene name)
Genetic variants : HAPMAP113540
Genomic Variants (DGV)CMTM1 [DGVbeta]
DECIPHER (Syndromes)16:66600350-66613038  ENSG00000089505
CONAN: Copy Number AnalysisCMTM1 
Mutations
ICGC Data PortalCMTM1 
TCGA Data PortalCMTM1 
Broad Tumor PortalCMTM1
OASIS PortalCMTM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMTM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCMTM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMTM1
DgiDB (Drug Gene Interaction Database)CMTM1
DoCM (Curated mutations)CMTM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMTM1 (select a term)
intoGenCMTM1
Cancer3DCMTM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607884   
Orphanet
MedgenCMTM1
Genetic Testing Registry CMTM1
NextProtQ8IZ96 [Medical]
TSGene113540
GENETestsCMTM1
Huge Navigator CMTM1 [HugePedia]
snp3D : Map Gene to Disease113540
BioCentury BCIQCMTM1
ClinGenCMTM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113540
Chemical/Pharm GKB GenePA38811
Clinical trialCMTM1
Miscellaneous
canSAR (ICR)CMTM1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMTM1
EVEXCMTM1
GoPubMedCMTM1
iHOPCMTM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:59 CEST 2017

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