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CMTM2 (CKLF like MARVEL transmembrane domain containing 2)

Identity

Alias_namesCKLFSF2
chemokine-like factor super family 2
chemokine-like factor superfamily 2
CKLF-like MARVEL transmembrane domain containing 2
Alias_symbol (synonym)MGC39436
FLJ25732
Other alias
HGNC (Hugo) CMTM2
LocusID (NCBI) 146225
Atlas_Id 53152
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 66579448 and ends at 66588274 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMTM2   19173
Cards
Entrez_Gene (NCBI)CMTM2  146225  CKLF like MARVEL transmembrane domain containing 2
AliasesCKLFSF2
GeneCards (Weizmann)CMTM2
Ensembl hg19 (Hinxton)ENSG00000140932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140932 [Gene_View]  chr16:66579448-66588274 [Contig_View]  CMTM2 [Vega]
ICGC DataPortalENSG00000140932
TCGA cBioPortalCMTM2
AceView (NCBI)CMTM2
Genatlas (Paris)CMTM2
WikiGenes146225
SOURCE (Princeton)CMTM2
Genetics Home Reference (NIH)CMTM2
Genomic and cartography
GoldenPath hg38 (UCSC)CMTM2  -     chr16:66579448-66588274 +  16q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMTM2  -     16q21   [Description]    (hg19-Feb_2009)
EnsemblCMTM2 - 16q21 [CytoView hg19]  CMTM2 - 16q21 [CytoView hg38]
Mapping of homologs : NCBICMTM2 [Mapview hg19]  CMTM2 [Mapview hg38]
OMIM607885   
Gene and transcription
Genbank (Entrez)AF479260 AK098598 AY862139 BC025354 BI830241
RefSeq transcript (Entrez)NM_001199317 NM_144673
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CMTM2
Cluster EST : UnigeneHs.195685 [ NCBI ]
CGAP (NCI)Hs.195685
Alternative Splicing GalleryENSG00000140932
Gene ExpressionCMTM2 [ NCBI-GEO ]   CMTM2 [ EBI - ARRAY_EXPRESS ]   CMTM2 [ SEEK ]   CMTM2 [ MEM ]
Gene Expression Viewer (FireBrowse)CMTM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146225
GTEX Portal (Tissue expression)CMTM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAZ6
Splice isoforms : SwissVarQ8TAZ6
PhosPhoSitePlusQ8TAZ6
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)CMTM2
DMDM Disease mutations146225
Blocks (Seattle)CMTM2
SuperfamilyQ8TAZ6
Human Protein AtlasENSG00000140932
Peptide AtlasQ8TAZ6
HPRD07434
IPIIPI00152170   IPI00553005   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAZ6
IntAct (EBI)Q8TAZ6
FunCoupENSG00000140932
BioGRIDCMTM2
STRING (EMBL)CMTM2
ZODIACCMTM2
Ontologies - Pathways
QuickGOQ8TAZ6
Ontology : AmiGOcytokine activity  extracellular space  chemotaxis  integral component of membrane  
Ontology : EGO-EBIcytokine activity  extracellular space  chemotaxis  integral component of membrane  
NDEx NetworkCMTM2
Atlas of Cancer Signalling NetworkCMTM2
Wikipedia pathwaysCMTM2
Orthology - Evolution
OrthoDB146225
GeneTree (enSembl)ENSG00000140932
Phylogenetic Trees/Animal Genes : TreeFamCMTM2
HOVERGENQ8TAZ6
HOGENOMQ8TAZ6
Homologs : HomoloGeneCMTM2
Homology/Alignments : Family Browser (UCSC)CMTM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMTM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMTM2
dbVarCMTM2
ClinVarCMTM2
1000_GenomesCMTM2 
Exome Variant ServerCMTM2
ExAC (Exome Aggregation Consortium)CMTM2 (select the gene name)
Genetic variants : HAPMAP146225
Genomic Variants (DGV)CMTM2 [DGVbeta]
DECIPHERCMTM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMTM2 
Mutations
ICGC Data PortalCMTM2 
TCGA Data PortalCMTM2 
Broad Tumor PortalCMTM2
OASIS PortalCMTM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMTM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCMTM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMTM2
DgiDB (Drug Gene Interaction Database)CMTM2
DoCM (Curated mutations)CMTM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMTM2 (select a term)
intoGenCMTM2
Cancer3DCMTM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607885   
Orphanet
MedgenCMTM2
Genetic Testing Registry CMTM2
NextProtQ8TAZ6 [Medical]
TSGene146225
GENETestsCMTM2
Target ValidationCMTM2
Huge Navigator CMTM2 [HugePedia]
snp3D : Map Gene to Disease146225
BioCentury BCIQCMTM2
ClinGenCMTM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146225
Chemical/Pharm GKB GenePA38812
Clinical trialCMTM2
Miscellaneous
canSAR (ICR)CMTM2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMTM2
EVEXCMTM2
GoPubMedCMTM2
iHOPCMTM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:53 CEST 2017

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