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CMTM3 (CKLF like MARVEL transmembrane domain containing 3)

Identity

Alias_namesCKLFSF3
chemokine-like factor superfamily 3
CKLF-like MARVEL transmembrane domain containing 3
Alias_symbol (synonym)FLJ31762
BNAS2
Other alias
HGNC (Hugo) CMTM3
LocusID (NCBI) 123920
Atlas_Id 54080
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 66604325 and ends at 66613893 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CMTM3 (16q21) / NCSTN (1q23.2)CMTM3 (16q21) / UBE2J2 (1p36.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMTM3   19174
Cards
Entrez_Gene (NCBI)CMTM3  123920  CKLF like MARVEL transmembrane domain containing 3
AliasesBNAS2; CKLFSF3
GeneCards (Weizmann)CMTM3
Ensembl hg19 (Hinxton)ENSG00000140931 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140931 [Gene_View]  chr16:66604325-66613893 [Contig_View]  CMTM3 [Vega]
ICGC DataPortalENSG00000140931
TCGA cBioPortalCMTM3
AceView (NCBI)CMTM3
Genatlas (Paris)CMTM3
WikiGenes123920
SOURCE (Princeton)CMTM3
Genetics Home Reference (NIH)CMTM3
Genomic and cartography
GoldenPath hg38 (UCSC)CMTM3  -     chr16:66604325-66613893 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMTM3  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblCMTM3 - 16q22.1 [CytoView hg19]  CMTM3 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBICMTM3 [Mapview hg19]  CMTM3 [Mapview hg38]
OMIM607886   
Gene and transcription
Genbank (Entrez)AF479813 AK056324 AK075075 AY166714 BC023509
RefSeq transcript (Entrez)NM_001048251 NM_144601 NM_181553 NM_181554 NM_181555
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CMTM3
Cluster EST : UnigeneHs.298198 [ NCBI ]
CGAP (NCI)Hs.298198
Alternative Splicing GalleryENSG00000140931
Gene ExpressionCMTM3 [ NCBI-GEO ]   CMTM3 [ EBI - ARRAY_EXPRESS ]   CMTM3 [ SEEK ]   CMTM3 [ MEM ]
Gene Expression Viewer (FireBrowse)CMTM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123920
GTEX Portal (Tissue expression)CMTM3
Human Protein AtlasENSG00000140931-CMTM3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MX0
Splice isoforms : SwissVarQ96MX0
PhosPhoSitePlusQ96MX0
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)CMTM3
DMDM Disease mutations123920
Blocks (Seattle)CMTM3
SuperfamilyQ96MX0
Human Protein Atlas [tissue]ENSG00000140931-CMTM3 [tissue]
Peptide AtlasQ96MX0
HPRD16259
IPIIPI00043490   IPI00217344   
Protein Interaction databases
DIP (DOE-UCLA)Q96MX0
IntAct (EBI)Q96MX0
FunCoupENSG00000140931
BioGRIDCMTM3
STRING (EMBL)CMTM3
ZODIACCMTM3
Ontologies - Pathways
QuickGOQ96MX0
Ontology : AmiGOcytokine activity  protein binding  extracellular space  cytoplasm  chemotaxis  integral component of membrane  nuclear membrane  positive regulation of B cell receptor signaling pathway  
Ontology : EGO-EBIcytokine activity  protein binding  extracellular space  cytoplasm  chemotaxis  integral component of membrane  nuclear membrane  positive regulation of B cell receptor signaling pathway  
NDEx NetworkCMTM3
Atlas of Cancer Signalling NetworkCMTM3
Wikipedia pathwaysCMTM3
Orthology - Evolution
OrthoDB123920
GeneTree (enSembl)ENSG00000140931
Phylogenetic Trees/Animal Genes : TreeFamCMTM3
HOVERGENQ96MX0
HOGENOMQ96MX0
Homologs : HomoloGeneCMTM3
Homology/Alignments : Family Browser (UCSC)CMTM3
Gene fusions - Rearrangements
Fusion: Tumor Portal CMTM3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMTM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMTM3
dbVarCMTM3
ClinVarCMTM3
1000_GenomesCMTM3 
Exome Variant ServerCMTM3
ExAC (Exome Aggregation Consortium)ENSG00000140931
GNOMAD BrowserENSG00000140931
Genetic variants : HAPMAP123920
Genomic Variants (DGV)CMTM3 [DGVbeta]
DECIPHERCMTM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMTM3 
Mutations
ICGC Data PortalCMTM3 
TCGA Data PortalCMTM3 
Broad Tumor PortalCMTM3
OASIS PortalCMTM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMTM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCMTM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMTM3
DgiDB (Drug Gene Interaction Database)CMTM3
DoCM (Curated mutations)CMTM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMTM3 (select a term)
intoGenCMTM3
Cancer3DCMTM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607886   
Orphanet
MedgenCMTM3
Genetic Testing Registry CMTM3
NextProtQ96MX0 [Medical]
TSGene123920
GENETestsCMTM3
Target ValidationCMTM3
Huge Navigator CMTM3 [HugePedia]
snp3D : Map Gene to Disease123920
BioCentury BCIQCMTM3
ClinGenCMTM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123920
Chemical/Pharm GKB GenePA38813
Clinical trialCMTM3
Miscellaneous
canSAR (ICR)CMTM3 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMTM3
EVEXCMTM3
GoPubMedCMTM3
iHOPCMTM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:45:14 CET 2017

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