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CMTM4 (CKLF like MARVEL transmembrane domain containing 4)

Identity

Alias_namesCKLFSF4
chemokine-like factor super family 4
chemokine-like factor superfamily 4
CKLF-like MARVEL transmembrane domain containing 4
Other alias
HGNC (Hugo) CMTM4
LocusID (NCBI) 146223
Atlas_Id 55827
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 66614750 and ends at 66696707 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CMTM4 (16q21) / AKR1C4 (10p15.1)CMTM4 (16q21) / RGMA (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMTM4   19175
Cards
Entrez_Gene (NCBI)CMTM4  146223  CKLF like MARVEL transmembrane domain containing 4
AliasesCKLFSF4
GeneCards (Weizmann)CMTM4
Ensembl hg19 (Hinxton)ENSG00000183723 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183723 [Gene_View]  chr16:66614750-66696707 [Contig_View]  CMTM4 [Vega]
ICGC DataPortalENSG00000183723
TCGA cBioPortalCMTM4
AceView (NCBI)CMTM4
Genatlas (Paris)CMTM4
WikiGenes146223
SOURCE (Princeton)CMTM4
Genetics Home Reference (NIH)CMTM4
Genomic and cartography
GoldenPath hg38 (UCSC)CMTM4  -     chr16:66614750-66696707 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMTM4  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblCMTM4 - 16q22.1 [CytoView hg19]  CMTM4 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBICMTM4 [Mapview hg19]  CMTM4 [Mapview hg38]
OMIM607887   
Gene and transcription
Genbank (Entrez)AF479814 AF521889 AF521890 AK000855 AK126493
RefSeq transcript (Entrez)NM_178818 NM_181521
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CMTM4
Cluster EST : UnigeneHs.643961 [ NCBI ]
CGAP (NCI)Hs.643961
Alternative Splicing GalleryENSG00000183723
Gene ExpressionCMTM4 [ NCBI-GEO ]   CMTM4 [ EBI - ARRAY_EXPRESS ]   CMTM4 [ SEEK ]   CMTM4 [ MEM ]
Gene Expression Viewer (FireBrowse)CMTM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146223
GTEX Portal (Tissue expression)CMTM4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZR5
Splice isoforms : SwissVarQ8IZR5
PhosPhoSitePlusQ8IZR5
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)CMTM4
DMDM Disease mutations146223
Blocks (Seattle)CMTM4
SuperfamilyQ8IZR5
Human Protein AtlasENSG00000183723
Peptide AtlasQ8IZR5
HPRD07435
IPIIPI00293848   IPI00333212   IPI00328313   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZR5
IntAct (EBI)Q8IZR5
FunCoupENSG00000183723
BioGRIDCMTM4
STRING (EMBL)CMTM4
ZODIACCMTM4
Ontologies - Pathways
QuickGOQ8IZR5
Ontology : AmiGOcytokine activity  extracellular space  chemotaxis  integral component of membrane  
Ontology : EGO-EBIcytokine activity  extracellular space  chemotaxis  integral component of membrane  
NDEx NetworkCMTM4
Atlas of Cancer Signalling NetworkCMTM4
Wikipedia pathwaysCMTM4
Orthology - Evolution
OrthoDB146223
GeneTree (enSembl)ENSG00000183723
Phylogenetic Trees/Animal Genes : TreeFamCMTM4
HOVERGENQ8IZR5
HOGENOMQ8IZR5
Homologs : HomoloGeneCMTM4
Homology/Alignments : Family Browser (UCSC)CMTM4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMTM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMTM4
dbVarCMTM4
ClinVarCMTM4
1000_GenomesCMTM4 
Exome Variant ServerCMTM4
ExAC (Exome Aggregation Consortium)CMTM4 (select the gene name)
Genetic variants : HAPMAP146223
Genomic Variants (DGV)CMTM4 [DGVbeta]
DECIPHERCMTM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMTM4 
Mutations
ICGC Data PortalCMTM4 
TCGA Data PortalCMTM4 
Broad Tumor PortalCMTM4
OASIS PortalCMTM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMTM4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCMTM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMTM4
DgiDB (Drug Gene Interaction Database)CMTM4
DoCM (Curated mutations)CMTM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMTM4 (select a term)
intoGenCMTM4
Cancer3DCMTM4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607887   
Orphanet
MedgenCMTM4
Genetic Testing Registry CMTM4
NextProtQ8IZR5 [Medical]
TSGene146223
GENETestsCMTM4
Target ValidationCMTM4
Huge Navigator CMTM4 [HugePedia]
snp3D : Map Gene to Disease146223
BioCentury BCIQCMTM4
ClinGenCMTM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146223
Chemical/Pharm GKB GenePA38814
Clinical trialCMTM4
Miscellaneous
canSAR (ICR)CMTM4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMTM4
EVEXCMTM4
GoPubMedCMTM4
iHOPCMTM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:58:11 CEST 2017

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