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CMTM5 (CKLF like MARVEL transmembrane domain containing 5)

Identity

Alias_namesCKLFSF5
chemokine-like factor super family 5
chemokine-like factor superfamily 5
CKLF-like MARVEL transmembrane domain containing 5
Alias_symbol (synonym)FLJ37521
Other alias
HGNC (Hugo) CMTM5
LocusID (NCBI) 116173
Atlas_Id 49966
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 23846017 and ends at 23848981 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMTM5   19176
Cards
Entrez_Gene (NCBI)CMTM5  116173  CKLF like MARVEL transmembrane domain containing 5
AliasesCKLFSF5
GeneCards (Weizmann)CMTM5
Ensembl hg19 (Hinxton)ENSG00000166091 [Gene_View]  chr14:23846017-23848981 [Contig_View]  CMTM5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166091 [Gene_View]  chr14:23846017-23848981 [Contig_View]  CMTM5 [Vega]
ICGC DataPortalENSG00000166091
TCGA cBioPortalCMTM5
AceView (NCBI)CMTM5
Genatlas (Paris)CMTM5
WikiGenes116173
SOURCE (Princeton)CMTM5
Genetics Home Reference (NIH)CMTM5
Genomic and cartography
GoldenPath hg19 (UCSC)CMTM5  -     chr14:23846017-23848981 +  14q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CMTM5  -     14q11.2   [Description]    (hg38-Dec_2013)
EnsemblCMTM5 - 14q11.2 [CytoView hg19]  CMTM5 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBICMTM5 [Mapview hg19]  CMTM5 [Mapview hg38]
OMIM607888   
Gene and transcription
Genbank (Entrez)AF479262 AF527413 AF527414 AF527948 AF527949
RefSeq transcript (Entrez)NM_001037288 NM_001288744 NM_001288745 NM_001288746 NM_138460 NM_181618
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)CMTM5
Cluster EST : UnigeneHs.99272 [ NCBI ]
CGAP (NCI)Hs.99272
Alternative Splicing GalleryENSG00000166091
Gene ExpressionCMTM5 [ NCBI-GEO ]   CMTM5 [ EBI - ARRAY_EXPRESS ]   CMTM5 [ SEEK ]   CMTM5 [ MEM ]
Gene Expression Viewer (FireBrowse)CMTM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116173
GTEX Portal (Tissue expression)CMTM5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DZ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DZ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DZ9
Splice isoforms : SwissVarQ96DZ9
PhosPhoSitePlusQ96DZ9
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)CMTM5
DMDM Disease mutations116173
Blocks (Seattle)CMTM5
SuperfamilyQ96DZ9
Human Protein AtlasENSG00000166091
Peptide AtlasQ96DZ9
HPRD06986
IPIIPI00375373   IPI00061287   IPI00375374   IPI00375375   IPI00375376   IPI00166289   IPI01025554   IPI00514276   
Protein Interaction databases
DIP (DOE-UCLA)Q96DZ9
IntAct (EBI)Q96DZ9
FunCoupENSG00000166091
BioGRIDCMTM5
STRING (EMBL)CMTM5
ZODIACCMTM5
Ontologies - Pathways
QuickGOQ96DZ9
Ontology : AmiGOcytokine activity  protein binding  extracellular space  chemotaxis  integral component of membrane  negative regulation of myoblast differentiation  
Ontology : EGO-EBIcytokine activity  protein binding  extracellular space  chemotaxis  integral component of membrane  negative regulation of myoblast differentiation  
NDEx NetworkCMTM5
Atlas of Cancer Signalling NetworkCMTM5
Wikipedia pathwaysCMTM5
Orthology - Evolution
OrthoDB116173
GeneTree (enSembl)ENSG00000166091
Phylogenetic Trees/Animal Genes : TreeFamCMTM5
HOVERGENQ96DZ9
HOGENOMQ96DZ9
Homologs : HomoloGeneCMTM5
Homology/Alignments : Family Browser (UCSC)CMTM5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMTM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMTM5
dbVarCMTM5
ClinVarCMTM5
1000_GenomesCMTM5 
Exome Variant ServerCMTM5
ExAC (Exome Aggregation Consortium)CMTM5 (select the gene name)
Genetic variants : HAPMAP116173
Genomic Variants (DGV)CMTM5 [DGVbeta]
DECIPHER (Syndromes)14:23846017-23848981  ENSG00000166091
CONAN: Copy Number AnalysisCMTM5 
Mutations
ICGC Data PortalCMTM5 
TCGA Data PortalCMTM5 
Broad Tumor PortalCMTM5
OASIS PortalCMTM5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMTM5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCMTM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMTM5
DgiDB (Drug Gene Interaction Database)CMTM5
DoCM (Curated mutations)CMTM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMTM5 (select a term)
intoGenCMTM5
Cancer3DCMTM5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607888   
Orphanet
MedgenCMTM5
Genetic Testing Registry CMTM5
NextProtQ96DZ9 [Medical]
TSGene116173
GENETestsCMTM5
Huge Navigator CMTM5 [HugePedia]
snp3D : Map Gene to Disease116173
BioCentury BCIQCMTM5
ClinGenCMTM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116173
Chemical/Pharm GKB GenePA38815
Clinical trialCMTM5
Miscellaneous
canSAR (ICR)CMTM5 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMTM5
EVEXCMTM5
GoPubMedCMTM5
iHOPCMTM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:59 CEST 2017

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