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CMTM6 (CKLF like MARVEL transmembrane domain containing 6)

Identity

Alias_namesCKLFSF6
chemokine-like factor super family 6
chemokine-like factor superfamily 6
CKLF-like MARVEL transmembrane domain containing 6
Alias_symbol (synonym)FLJ20396
Other aliasPRO2219
HGNC (Hugo) CMTM6
LocusID (NCBI) 54918
Atlas_Id 61926
Location 3p22.3  [Link to chromosome band 3p22]
Location_base_pair Starts at 32481312 and ends at 32502911 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CMTM6 (3p22.3) / CMTM6 (3p22.3)CMTM6 (3p22.3) / EPHB4 (7q22.1)FANCD2 (3p25.3) / CMTM6 (3p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMTM6   19177
Cards
Entrez_Gene (NCBI)CMTM6  54918  CKLF like MARVEL transmembrane domain containing 6
AliasesCKLFSF6; PRO2219
GeneCards (Weizmann)CMTM6
Ensembl hg19 (Hinxton)ENSG00000091317 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000091317 [Gene_View]  chr3:32481312-32502911 [Contig_View]  CMTM6 [Vega]
ICGC DataPortalENSG00000091317
TCGA cBioPortalCMTM6
AceView (NCBI)CMTM6
Genatlas (Paris)CMTM6
WikiGenes54918
SOURCE (Princeton)CMTM6
Genetics Home Reference (NIH)CMTM6
Genomic and cartography
GoldenPath hg38 (UCSC)CMTM6  -     chr3:32481312-32502911 -  3p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMTM6  -     3p22.3   [Description]    (hg19-Feb_2009)
EnsemblCMTM6 - 3p22.3 [CytoView hg19]  CMTM6 - 3p22.3 [CytoView hg38]
Mapping of homologs : NCBICMTM6 [Mapview hg19]  CMTM6 [Mapview hg38]
OMIM607889   
Gene and transcription
Genbank (Entrez)AF116694 AF479261 AK000403 AK172793 BC002797
RefSeq transcript (Entrez)NM_017801
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CMTM6
Cluster EST : UnigeneHs.731820 [ NCBI ]
CGAP (NCI)Hs.731820
Alternative Splicing GalleryENSG00000091317
Gene ExpressionCMTM6 [ NCBI-GEO ]   CMTM6 [ EBI - ARRAY_EXPRESS ]   CMTM6 [ SEEK ]   CMTM6 [ MEM ]
Gene Expression Viewer (FireBrowse)CMTM6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54918
GTEX Portal (Tissue expression)CMTM6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX76
Splice isoforms : SwissVarQ9NX76
PhosPhoSitePlusQ9NX76
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)CMTM6
DMDM Disease mutations54918
Blocks (Seattle)CMTM6
SuperfamilyQ9NX76
Human Protein AtlasENSG00000091317
Peptide AtlasQ9NX76
HPRD06987
IPIIPI00015801   IPI00383346   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX76
IntAct (EBI)Q9NX76
FunCoupENSG00000091317
BioGRIDCMTM6
STRING (EMBL)CMTM6
ZODIACCMTM6
Ontologies - Pathways
QuickGOQ9NX76
Ontology : AmiGOcytokine activity  extracellular space  plasma membrane  chemotaxis  membrane  integral component of membrane  azurophil granule membrane  specific granule membrane  neutrophil degranulation  extracellular exosome  
Ontology : EGO-EBIcytokine activity  extracellular space  plasma membrane  chemotaxis  membrane  integral component of membrane  azurophil granule membrane  specific granule membrane  neutrophil degranulation  extracellular exosome  
NDEx NetworkCMTM6
Atlas of Cancer Signalling NetworkCMTM6
Wikipedia pathwaysCMTM6
Orthology - Evolution
OrthoDB54918
GeneTree (enSembl)ENSG00000091317
Phylogenetic Trees/Animal Genes : TreeFamCMTM6
HOVERGENQ9NX76
HOGENOMQ9NX76
Homologs : HomoloGeneCMTM6
Homology/Alignments : Family Browser (UCSC)CMTM6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMTM6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMTM6
dbVarCMTM6
ClinVarCMTM6
1000_GenomesCMTM6 
Exome Variant ServerCMTM6
ExAC (Exome Aggregation Consortium)CMTM6 (select the gene name)
Genetic variants : HAPMAP54918
Genomic Variants (DGV)CMTM6 [DGVbeta]
DECIPHERCMTM6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMTM6 
Mutations
ICGC Data PortalCMTM6 
TCGA Data PortalCMTM6 
Broad Tumor PortalCMTM6
OASIS PortalCMTM6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMTM6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCMTM6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMTM6
DgiDB (Drug Gene Interaction Database)CMTM6
DoCM (Curated mutations)CMTM6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMTM6 (select a term)
intoGenCMTM6
Cancer3DCMTM6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607889   
Orphanet
MedgenCMTM6
Genetic Testing Registry CMTM6
NextProtQ9NX76 [Medical]
TSGene54918
GENETestsCMTM6
Target ValidationCMTM6
Huge Navigator CMTM6 [HugePedia]
snp3D : Map Gene to Disease54918
BioCentury BCIQCMTM6
ClinGenCMTM6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54918
Chemical/Pharm GKB GenePA38816
Clinical trialCMTM6
Miscellaneous
canSAR (ICR)CMTM6 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMTM6
EVEXCMTM6
GoPubMedCMTM6
iHOPCMTM6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:59 CEST 2017

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