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CMTM7 (CKLF like MARVEL transmembrane domain containing 7)

Identity

Alias_namesCKLFSF7
chemokine-like factor super family 7
chemokine-like factor superfamily 7
CKLF-like MARVEL transmembrane domain containing 7
Alias_symbol (synonym)FLJ30992
Other alias
HGNC (Hugo) CMTM7
LocusID (NCBI) 112616
Atlas_Id 54052
Location 3p22.3  [Link to chromosome band 3p22]
Location_base_pair Starts at 32433163 and ends at 32496336 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CMTM7 (3p22.3) / CLDN11 (3q26.2)CMTM7 (3p22.3) / FLNA (Xq28)CMTM7 (3p22.3) / P2RY11 (19p13.2)
CMTM7 (3p22.3) / RSPO1 (1p34.3)GLB1 (3p22.3) / CMTM7 (3p22.3)KIAA2026 (9p24.1) / CMTM7 (3p22.3)
CMTM7 3p22.3 / CLDN11 3q26.2KIAA2026 9p24.1 / CMTM7 3p22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMTM7   19178
Cards
Entrez_Gene (NCBI)CMTM7  112616  CKLF like MARVEL transmembrane domain containing 7
AliasesCKLFSF7
GeneCards (Weizmann)CMTM7
Ensembl hg19 (Hinxton)ENSG00000153551 [Gene_View]  chr3:32433163-32496336 [Contig_View]  CMTM7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000153551 [Gene_View]  chr3:32433163-32496336 [Contig_View]  CMTM7 [Vega]
ICGC DataPortalENSG00000153551
TCGA cBioPortalCMTM7
AceView (NCBI)CMTM7
Genatlas (Paris)CMTM7
WikiGenes112616
SOURCE (Princeton)CMTM7
Genetics Home Reference (NIH)CMTM7
Genomic and cartography
GoldenPath hg19 (UCSC)CMTM7  -     chr3:32433163-32496336 +  3p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CMTM7  -     3p22.3   [Description]    (hg38-Dec_2013)
EnsemblCMTM7 - 3p22.3 [CytoView hg19]  CMTM7 - 3p22.3 [CytoView hg38]
Mapping of homologs : NCBICMTM7 [Mapview hg19]  CMTM7 [Mapview hg38]
OMIM607890   
Gene and transcription
Genbank (Entrez)AF479263 AK055554 AK308878 AL832450 AY174113
RefSeq transcript (Entrez)NM_138410 NM_181472
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)CMTM7
Cluster EST : UnigeneHs.440494 [ NCBI ]
CGAP (NCI)Hs.440494
Alternative Splicing GalleryENSG00000153551
Gene ExpressionCMTM7 [ NCBI-GEO ]   CMTM7 [ EBI - ARRAY_EXPRESS ]   CMTM7 [ SEEK ]   CMTM7 [ MEM ]
Gene Expression Viewer (FireBrowse)CMTM7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112616
GTEX Portal (Tissue expression)CMTM7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FZ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FZ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FZ5
Splice isoforms : SwissVarQ96FZ5
PhosPhoSitePlusQ96FZ5
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)CMTM7
DMDM Disease mutations112616
Blocks (Seattle)CMTM7
SuperfamilyQ96FZ5
Human Protein AtlasENSG00000153551
Peptide AtlasQ96FZ5
HPRD06988
IPIIPI00062343   IPI00168564   IPI00921413   IPI00375393   IPI00789565   IPI01010087   IPI01010094   
Protein Interaction databases
DIP (DOE-UCLA)Q96FZ5
IntAct (EBI)Q96FZ5
FunCoupENSG00000153551
BioGRIDCMTM7
STRING (EMBL)CMTM7
ZODIACCMTM7
Ontologies - Pathways
QuickGOQ96FZ5
Ontology : AmiGOB-1a B cell differentiation  cytokine activity  extracellular space  chemotaxis  membrane  integral component of membrane  
Ontology : EGO-EBIB-1a B cell differentiation  cytokine activity  extracellular space  chemotaxis  membrane  integral component of membrane  
NDEx NetworkCMTM7
Atlas of Cancer Signalling NetworkCMTM7
Wikipedia pathwaysCMTM7
Orthology - Evolution
OrthoDB112616
GeneTree (enSembl)ENSG00000153551
Phylogenetic Trees/Animal Genes : TreeFamCMTM7
HOVERGENQ96FZ5
HOGENOMQ96FZ5
Homologs : HomoloGeneCMTM7
Homology/Alignments : Family Browser (UCSC)CMTM7
Gene fusions - Rearrangements
Fusion : MitelmanCMTM7/CLDN11 [3p22.3/3q26.2]  
Fusion : MitelmanGLB1/CMTM7 [3p22.3/3p22.3]  [t(3;3)(p22;p22)]  
Fusion : MitelmanKIAA2026/CMTM7 [9p24.1/3p22.3]  [t(3;9)(p22;p24)]  
Fusion: TCGACMTM7 3p22.3 CLDN11 3q26.2 SKCM
Fusion: TCGAKIAA2026 9p24.1 CMTM7 3p22.3 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMTM7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMTM7
dbVarCMTM7
ClinVarCMTM7
1000_GenomesCMTM7 
Exome Variant ServerCMTM7
ExAC (Exome Aggregation Consortium)CMTM7 (select the gene name)
Genetic variants : HAPMAP112616
Genomic Variants (DGV)CMTM7 [DGVbeta]
DECIPHER (Syndromes)3:32433163-32496336  ENSG00000153551
CONAN: Copy Number AnalysisCMTM7 
Mutations
ICGC Data PortalCMTM7 
TCGA Data PortalCMTM7 
Broad Tumor PortalCMTM7
OASIS PortalCMTM7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCMTM7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCMTM7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CMTM7
DgiDB (Drug Gene Interaction Database)CMTM7
DoCM (Curated mutations)CMTM7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMTM7 (select a term)
intoGenCMTM7
Cancer3DCMTM7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607890   
Orphanet
MedgenCMTM7
Genetic Testing Registry CMTM7
NextProtQ96FZ5 [Medical]
TSGene112616
GENETestsCMTM7
Huge Navigator CMTM7 [HugePedia]
snp3D : Map Gene to Disease112616
BioCentury BCIQCMTM7
ClinGenCMTM7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112616
Chemical/Pharm GKB GenePA38817
Clinical trialCMTM7
Miscellaneous
canSAR (ICR)CMTM7 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMTM7
EVEXCMTM7
GoPubMedCMTM7
iHOPCMTM7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:01:00 CET 2017

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