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CMTR2 (cap methyltransferase 2)

Identity

Alias_namesFTSJD1
FtsJ methyltransferase domain containing 1
Alias_symbol (synonym)FLJ11171
AFT
MTr2
Other aliasHMTr2
HGNC (Hugo) CMTR2
LocusID (NCBI) 55783
Atlas_Id 61927
Location 16q22.2  [Link to chromosome band 16q22]
Location_base_pair Starts at 71282300 and ends at 71289412 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CMTR2 (16q22.2) / CMTR2 (16q22.2)CMTR2 (16q22.2) / SH3PXD2A (10q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CMTR2   25635
Cards
Entrez_Gene (NCBI)CMTR2  55783  cap methyltransferase 2
AliasesAFT; FTSJD1; HMTr2; MTr2
GeneCards (Weizmann)CMTR2
Ensembl hg19 (Hinxton)ENSG00000180917 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180917 [Gene_View]  chr16:71282300-71289412 [Contig_View]  CMTR2 [Vega]
ICGC DataPortalENSG00000180917
TCGA cBioPortalCMTR2
AceView (NCBI)CMTR2
Genatlas (Paris)CMTR2
WikiGenes55783
SOURCE (Princeton)CMTR2
Genetics Home Reference (NIH)CMTR2
Genomic and cartography
GoldenPath hg38 (UCSC)CMTR2  -     chr16:71282300-71289412 -  16q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CMTR2  -     16q22.2   [Description]    (hg19-Feb_2009)
EnsemblCMTR2 - 16q22.2 [CytoView hg19]  CMTR2 - 16q22.2 [CytoView hg38]
Mapping of homologs : NCBICMTR2 [Mapview hg19]  CMTR2 [Mapview hg38]
OMIM616190   
Gene and transcription
Genbank (Entrez)AA968997 AF458590 AK000289 AK002033 AK023183
RefSeq transcript (Entrez)NM_001099642 NM_001324374 NM_001324377 NM_001324378 NM_001324379 NM_018348
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CMTR2
Cluster EST : UnigeneHs.72782 [ NCBI ]
CGAP (NCI)Hs.72782
Alternative Splicing GalleryENSG00000180917
Gene ExpressionCMTR2 [ NCBI-GEO ]   CMTR2 [ EBI - ARRAY_EXPRESS ]   CMTR2 [ SEEK ]   CMTR2 [ MEM ]
Gene Expression Viewer (FireBrowse)CMTR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55783
GTEX Portal (Tissue expression)CMTR2
Human Protein AtlasENSG00000180917-CMTR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYT2
Splice isoforms : SwissVarQ8IYT2
PhosPhoSitePlusQ8IYT2
Domaine pattern : Prosite (Expaxy)SAM_MT_ADRIFT (PS51614)   
Domains : Interpro (EBI)Adrift-typ_MeTrfase    rRNA_MeTrfase_FtsJ_dom    SAM-dependent_MTases   
Domain families : Pfam (Sanger)FtsJ (PF01728)   
Domain families : Pfam (NCBI)pfam01728   
Conserved Domain (NCBI)CMTR2
DMDM Disease mutations55783
Blocks (Seattle)CMTR2
SuperfamilyQ8IYT2
Human Protein Atlas [tissue]ENSG00000180917-CMTR2 [tissue]
Peptide AtlasQ8IYT2
HPRD08560
IPIIPI00334846   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYT2
IntAct (EBI)Q8IYT2
FunCoupENSG00000180917
BioGRIDCMTR2
STRING (EMBL)CMTR2
ZODIACCMTR2
Ontologies - Pathways
QuickGOQ8IYT2
Ontology : AmiGOmRNA (nucleoside-2'-O-)-methyltransferase activity  nucleus  cytoplasm  7-methylguanosine mRNA capping  cap2 mRNA methylation  
Ontology : EGO-EBImRNA (nucleoside-2'-O-)-methyltransferase activity  nucleus  cytoplasm  7-methylguanosine mRNA capping  cap2 mRNA methylation  
NDEx NetworkCMTR2
Atlas of Cancer Signalling NetworkCMTR2
Wikipedia pathwaysCMTR2
Orthology - Evolution
OrthoDB55783
GeneTree (enSembl)ENSG00000180917
Phylogenetic Trees/Animal Genes : TreeFamCMTR2
HOVERGENQ8IYT2
HOGENOMQ8IYT2
Homologs : HomoloGeneCMTR2
Homology/Alignments : Family Browser (UCSC)CMTR2
Gene fusions - Rearrangements
Fusion: Tumor Portal CMTR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCMTR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CMTR2
dbVarCMTR2
ClinVarCMTR2
1000_GenomesCMTR2 
Exome Variant ServerCMTR2
ExAC (Exome Aggregation Consortium)ENSG00000180917
GNOMAD BrowserENSG00000180917
Genetic variants : HAPMAP55783
Genomic Variants (DGV)CMTR2 [DGVbeta]
DECIPHERCMTR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCMTR2 
Mutations
ICGC Data PortalCMTR2 
TCGA Data PortalCMTR2 
Broad Tumor PortalCMTR2
OASIS PortalCMTR2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCMTR2
BioMutasearch CMTR2
DgiDB (Drug Gene Interaction Database)CMTR2
DoCM (Curated mutations)CMTR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CMTR2 (select a term)
intoGenCMTR2
Cancer3DCMTR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616190   
Orphanet
MedgenCMTR2
Genetic Testing Registry CMTR2
NextProtQ8IYT2 [Medical]
TSGene55783
GENETestsCMTR2
Target ValidationCMTR2
Huge Navigator CMTR2 [HugePedia]
snp3D : Map Gene to Disease55783
BioCentury BCIQCMTR2
ClinGenCMTR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55783
Chemical/Pharm GKB GenePA162389041
Clinical trialCMTR2
Miscellaneous
canSAR (ICR)CMTR2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCMTR2
EVEXCMTR2
GoPubMedCMTR2
iHOPCMTR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Nov 9 11:42:55 CET 2017

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