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CNBD1 (cyclic nucleotide binding domain containing 1)

Identity

Alias_symbol (synonym)FLJ35802
Other alias-
HGNC (Hugo) CNBD1
LocusID (NCBI) 168975
Atlas_Id 53646
Location 8q21.3  [Link to chromosome band 8q21]
Location_base_pair Starts at 87878676 and ends at 88394955 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AGO2 (8q24.3) / CNBD1 (8q21.3)CNBD1 (8q21.3) / PTPN2 (18p11.21)DCAF12 (9p13.3) / CNBD1 (8q21.3)
CNBD1 8q21.3 / PTPN2 18p11.21DCAF12 9p13.3 / CNBD1 8q21.3EIF2C2 CNBD1 8q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNBD1   26663
Cards
Entrez_Gene (NCBI)CNBD1  168975  cyclic nucleotide binding domain containing 1
Aliases
GeneCards (Weizmann)CNBD1
Ensembl hg19 (Hinxton)ENSG00000176571 [Gene_View]  chr8:87878676-88394955 [Contig_View]  CNBD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176571 [Gene_View]  chr8:87878676-88394955 [Contig_View]  CNBD1 [Vega]
ICGC DataPortalENSG00000176571
TCGA cBioPortalCNBD1
AceView (NCBI)CNBD1
Genatlas (Paris)CNBD1
WikiGenes168975
SOURCE (Princeton)CNBD1
Genetics Home Reference (NIH)CNBD1
Genomic and cartography
GoldenPath hg19 (UCSC)CNBD1  -     chr8:87878676-88394955 +  8q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CNBD1  -     8q21.3   [Description]    (hg38-Dec_2013)
EnsemblCNBD1 - 8q21.3 [CytoView hg19]  CNBD1 - 8q21.3 [CytoView hg38]
Mapping of homologs : NCBICNBD1 [Mapview hg19]  CNBD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093121 BC117326 BC117328
RefSeq transcript (Entrez)NM_173538
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)CNBD1
Cluster EST : UnigeneHs.246284 [ NCBI ]
CGAP (NCI)Hs.246284
Alternative Splicing GalleryENSG00000176571
Gene ExpressionCNBD1 [ NCBI-GEO ]   CNBD1 [ EBI - ARRAY_EXPRESS ]   CNBD1 [ SEEK ]   CNBD1 [ MEM ]
Gene Expression Viewer (FireBrowse)CNBD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)168975
GTEX Portal (Tissue expression)CNBD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA66   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA66  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA66
Splice isoforms : SwissVarQ8NA66
PhosPhoSitePlusQ8NA66
Domaine pattern : Prosite (Expaxy)CNMP_BINDING_3 (PS50042)   
Domains : Interpro (EBI)cNMP-bd-like    cNMP-bd_dom    RmlC-like_jellyroll   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CNBD1
DMDM Disease mutations168975
Blocks (Seattle)CNBD1
SuperfamilyQ8NA66
Human Protein AtlasENSG00000176571
Peptide AtlasQ8NA66
HPRD08192
IPIIPI00167918   IPI00983010   IPI00979353   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA66
IntAct (EBI)Q8NA66
FunCoupENSG00000176571
BioGRIDCNBD1
STRING (EMBL)CNBD1
ZODIACCNBD1
Ontologies - Pathways
QuickGOQ8NA66
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCNBD1
Atlas of Cancer Signalling NetworkCNBD1
Wikipedia pathwaysCNBD1
Orthology - Evolution
OrthoDB168975
GeneTree (enSembl)ENSG00000176571
Phylogenetic Trees/Animal Genes : TreeFamCNBD1
HOVERGENQ8NA66
HOGENOMQ8NA66
Homologs : HomoloGeneCNBD1
Homology/Alignments : Family Browser (UCSC)CNBD1
Gene fusions - Rearrangements
Fusion : MitelmanAGO2/CNBD1 [8q24.3/8q21.3]  [t(8;8)(q21;q24)]  
Fusion : MitelmanCNBD1/PTPN2 [8q21.3/18p11.21]  [t(8;18)(q21;p11)]  
Fusion : MitelmanDCAF12/CNBD1 [9p13.3/8q21.3]  [t(8;9)(q21;p13)]  
Fusion: TCGACNBD1 8q21.3 PTPN2 18p11.21 BLCA
Fusion: TCGADCAF12 9p13.3 CNBD1 8q21.3 BRCA
Fusion: TCGAEIF2C2 CNBD1 8q21.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNBD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNBD1
dbVarCNBD1
ClinVarCNBD1
1000_GenomesCNBD1 
Exome Variant ServerCNBD1
ExAC (Exome Aggregation Consortium)CNBD1 (select the gene name)
Genetic variants : HAPMAP168975
Genomic Variants (DGV)CNBD1 [DGVbeta]
DECIPHER (Syndromes)8:87878676-88394955  ENSG00000176571
CONAN: Copy Number AnalysisCNBD1 
Mutations
ICGC Data PortalCNBD1 
TCGA Data PortalCNBD1 
Broad Tumor PortalCNBD1
OASIS PortalCNBD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNBD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNBD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNBD1
DgiDB (Drug Gene Interaction Database)CNBD1
DoCM (Curated mutations)CNBD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNBD1 (select a term)
intoGenCNBD1
Cancer3DCNBD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCNBD1
Genetic Testing Registry CNBD1
NextProtQ8NA66 [Medical]
TSGene168975
GENETestsCNBD1
Huge Navigator CNBD1 [HugePedia]
snp3D : Map Gene to Disease168975
BioCentury BCIQCNBD1
ClinGenCNBD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD168975
Chemical/Pharm GKB GenePA142672090
Clinical trialCNBD1
Miscellaneous
canSAR (ICR)CNBD1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNBD1
EVEXCNBD1
GoPubMedCNBD1
iHOPCNBD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:01:00 CET 2017

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