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CNBD2 (cyclic nucleotide binding domain containing 2)

Identity

Alias_namesC20orf152
CNMPD1
chromosome 20 open reading frame 152
cyclic nucleotide (cNMP) binding domain containing 1
Alias_symbol (synonym)dJ954P9.1
Other alias
HGNC (Hugo) CNBD2
LocusID (NCBI) 140894
Atlas_Id 61929
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 35968581 and ends at 36030700 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHD6 (20q12) / CNBD2 (20q11.23)RALGAPB (20q11.23) / CNBD2 (20q11.23)USP16 (21q21.3) / CNBD2 (20q11.23)
ZGPAT (20q13.33) / CNBD2 (20q11.23)ZNFX1 (20q13.13) / CNBD2 (20q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNBD2   16145
Cards
Entrez_Gene (NCBI)CNBD2  140894  cyclic nucleotide binding domain containing 2
AliasesC20orf152; CNMPD1
GeneCards (Weizmann)CNBD2
Ensembl hg19 (Hinxton)ENSG00000149646 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149646 [Gene_View]  chr20:35968581-36030700 [Contig_View]  CNBD2 [Vega]
ICGC DataPortalENSG00000149646
TCGA cBioPortalCNBD2
AceView (NCBI)CNBD2
Genatlas (Paris)CNBD2
WikiGenes140894
SOURCE (Princeton)CNBD2
Genetics Home Reference (NIH)CNBD2
Genomic and cartography
GoldenPath hg38 (UCSC)CNBD2  -     chr20:35968581-36030700 +  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNBD2  -     20q11.23   [Description]    (hg19-Feb_2009)
EnsemblCNBD2 - 20q11.23 [CytoView hg19]  CNBD2 - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBICNBD2 [Mapview hg19]  CNBD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI191598 AK057454 BC030782 BC057288 BC114634
RefSeq transcript (Entrez)NM_001207076 NM_001304367 NM_080834
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNBD2
Cluster EST : UnigeneHs.732697 [ NCBI ]
CGAP (NCI)Hs.732697
Alternative Splicing GalleryENSG00000149646
Gene ExpressionCNBD2 [ NCBI-GEO ]   CNBD2 [ EBI - ARRAY_EXPRESS ]   CNBD2 [ SEEK ]   CNBD2 [ MEM ]
Gene Expression Viewer (FireBrowse)CNBD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140894
GTEX Portal (Tissue expression)CNBD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M20
Splice isoforms : SwissVarQ96M20
PhosPhoSitePlusQ96M20
Domaine pattern : Prosite (Expaxy)CNMP_BINDING_1 (PS00888)    CNMP_BINDING_3 (PS50042)   
Domains : Interpro (EBI)cNMP-bd-like    cNMP-bd_CS    cNMP-bd_dom    RmlC-like_jellyroll   
Domain families : Pfam (Sanger)cNMP_binding (PF00027)   
Domain families : Pfam (NCBI)pfam00027   
Domain families : Smart (EMBL)cNMP (SM00100)  
Conserved Domain (NCBI)CNBD2
DMDM Disease mutations140894
Blocks (Seattle)CNBD2
SuperfamilyQ96M20
Human Protein AtlasENSG00000149646
Peptide AtlasQ96M20
HPRD09838
IPIIPI00097257   IPI00414464   IPI01012255   IPI00640033   
Protein Interaction databases
DIP (DOE-UCLA)Q96M20
IntAct (EBI)Q96M20
FunCoupENSG00000149646
BioGRIDCNBD2
STRING (EMBL)CNBD2
ZODIACCNBD2
Ontologies - Pathways
QuickGOQ96M20
Ontology : AmiGOcytosol  spermatogenesis  cAMP binding  
Ontology : EGO-EBIcytosol  spermatogenesis  cAMP binding  
NDEx NetworkCNBD2
Atlas of Cancer Signalling NetworkCNBD2
Wikipedia pathwaysCNBD2
Orthology - Evolution
OrthoDB140894
GeneTree (enSembl)ENSG00000149646
Phylogenetic Trees/Animal Genes : TreeFamCNBD2
HOVERGENQ96M20
HOGENOMQ96M20
Homologs : HomoloGeneCNBD2
Homology/Alignments : Family Browser (UCSC)CNBD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNBD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNBD2
dbVarCNBD2
ClinVarCNBD2
1000_GenomesCNBD2 
Exome Variant ServerCNBD2
ExAC (Exome Aggregation Consortium)CNBD2 (select the gene name)
Genetic variants : HAPMAP140894
Genomic Variants (DGV)CNBD2 [DGVbeta]
DECIPHERCNBD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNBD2 
Mutations
ICGC Data PortalCNBD2 
TCGA Data PortalCNBD2 
Broad Tumor PortalCNBD2
OASIS PortalCNBD2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCNBD2
BioMutasearch CNBD2
DgiDB (Drug Gene Interaction Database)CNBD2
DoCM (Curated mutations)CNBD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNBD2 (select a term)
intoGenCNBD2
Cancer3DCNBD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCNBD2
Genetic Testing Registry CNBD2
NextProtQ96M20 [Medical]
TSGene140894
GENETestsCNBD2
Huge Navigator CNBD2 [HugePedia]
snp3D : Map Gene to Disease140894
BioCentury BCIQCNBD2
ClinGenCNBD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140894
Chemical/Pharm GKB GenePA25694
Clinical trialCNBD2
Miscellaneous
canSAR (ICR)CNBD2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNBD2
EVEXCNBD2
GoPubMedCNBD2
iHOPCNBD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:06:19 CEST 2017

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