Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CNDP2 (carnosine dipeptidase 2)

Identity

Alias_namesPEPA
peptidase A
Alias_symbol (synonym)FLJ10830
CN2
HsT2298
CPGL
Other aliasHEL-S-13
HGNC (Hugo) CNDP2
LocusID (NCBI) 55748
Atlas_Id 52839
Location 18q22.3  [Link to chromosome band 18q22]
Location_base_pair Starts at 74499588 and ends at 74523454 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CNDP2 (18q22.3) / ALKBH5 (17p11.2)CNDP2 (18q22.3) / CNDP2 (18q22.3)CNDP2 (18q22.3) / FRYL (4p11)
CNDP2 (18q22.3) / PAX8 (2q13)CNDP2 (18q22.3) / RPL9 (4p14)PAX8 (2q13) / CNDP2 (18q22.3)
RYBP (3p13) / CNDP2 (18q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNDP2   24437
Cards
Entrez_Gene (NCBI)CNDP2  55748  carnosine dipeptidase 2
AliasesCN2; CPGL; HEL-S-13; HsT2298; 
PEPA
GeneCards (Weizmann)CNDP2
Ensembl hg19 (Hinxton)ENSG00000133313 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133313 [Gene_View]  chr18:74499588-74523454 [Contig_View]  CNDP2 [Vega]
ICGC DataPortalENSG00000133313
TCGA cBioPortalCNDP2
AceView (NCBI)CNDP2
Genatlas (Paris)CNDP2
WikiGenes55748
SOURCE (Princeton)CNDP2
Genetics Home Reference (NIH)CNDP2
Genomic and cartography
GoldenPath hg38 (UCSC)CNDP2  -     chr18:74499588-74523454 +  18q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNDP2  -     18q22.3   [Description]    (hg19-Feb_2009)
EnsemblCNDP2 - 18q22.3 [CytoView hg19]  CNDP2 - 18q22.3 [CytoView hg38]
Mapping of homologs : NCBICNDP2 [Mapview hg19]  CNDP2 [Mapview hg38]
OMIM169800   
Gene and transcription
Genbank (Entrez)AF258592 AJ347717 AK001262 AK001692 AK001983
RefSeq transcript (Entrez)NM_001168499 NM_018235
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNDP2
Cluster EST : UnigeneHs.149185 [ NCBI ]
CGAP (NCI)Hs.149185
Alternative Splicing GalleryENSG00000133313
Gene ExpressionCNDP2 [ NCBI-GEO ]   CNDP2 [ EBI - ARRAY_EXPRESS ]   CNDP2 [ SEEK ]   CNDP2 [ MEM ]
Gene Expression Viewer (FireBrowse)CNDP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55748
GTEX Portal (Tissue expression)CNDP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KP4
Splice isoforms : SwissVarQ96KP4
Catalytic activity : Enzyme3.4.13.18 [ Enzyme-Expasy ]   3.4.13.183.4.13.18 [ IntEnz-EBI ]   3.4.13.18 [ BRENDA ]   3.4.13.18 [ KEGG ]   
PhosPhoSitePlusQ96KP4
Domaine pattern : Prosite (Expaxy)ARGE_DAPE_CPG2_2 (PS00759)   
Domains : Interpro (EBI)ArgE/DapE_CS    CNDP/DUG1    Peptidase_M20    Peptidase_M20_dimer   
Domain families : Pfam (Sanger)M20_dimer (PF07687)    Peptidase_M20 (PF01546)   
Domain families : Pfam (NCBI)pfam07687    pfam01546   
Conserved Domain (NCBI)CNDP2
DMDM Disease mutations55748
Blocks (Seattle)CNDP2
PDB (SRS)4RUH   
PDB (PDBSum)4RUH   
PDB (IMB)4RUH   
PDB (RSDB)4RUH   
Structural Biology KnowledgeBase4RUH   
SCOP (Structural Classification of Proteins)4RUH   
CATH (Classification of proteins structures)4RUH   
SuperfamilyQ96KP4
Human Protein AtlasENSG00000133313
Peptide AtlasQ96KP4
HPRD09893
IPIIPI00177728   IPI00165579   IPI00386314   
Protein Interaction databases
DIP (DOE-UCLA)Q96KP4
IntAct (EBI)Q96KP4
FunCoupENSG00000133313
BioGRIDCNDP2
STRING (EMBL)CNDP2
ZODIACCNDP2
Ontologies - Pathways
QuickGOQ96KP4
Ontology : AmiGOsulfur amino acid metabolic process  carboxypeptidase activity  nucleoplasm  cytosol  cytosol  proteolysis  glutathione biosynthetic process  metallopeptidase activity  metal ion binding  extracellular exosome  cytosolic dipeptidase activity  alanylglutamate dipeptidase activity  
Ontology : EGO-EBIsulfur amino acid metabolic process  carboxypeptidase activity  nucleoplasm  cytosol  cytosol  proteolysis  glutathione biosynthetic process  metallopeptidase activity  metal ion binding  extracellular exosome  cytosolic dipeptidase activity  alanylglutamate dipeptidase activity  
Pathways : KEGGArginine and proline metabolism    Histidine metabolism    beta-Alanine metabolism   
NDEx NetworkCNDP2
Atlas of Cancer Signalling NetworkCNDP2
Wikipedia pathwaysCNDP2
Orthology - Evolution
OrthoDB55748
GeneTree (enSembl)ENSG00000133313
Phylogenetic Trees/Animal Genes : TreeFamCNDP2
HOVERGENQ96KP4
HOGENOMQ96KP4
Homologs : HomoloGeneCNDP2
Homology/Alignments : Family Browser (UCSC)CNDP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNDP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNDP2
dbVarCNDP2
ClinVarCNDP2
1000_GenomesCNDP2 
Exome Variant ServerCNDP2
ExAC (Exome Aggregation Consortium)CNDP2 (select the gene name)
Genetic variants : HAPMAP55748
Genomic Variants (DGV)CNDP2 [DGVbeta]
DECIPHERCNDP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNDP2 
Mutations
ICGC Data PortalCNDP2 
TCGA Data PortalCNDP2 
Broad Tumor PortalCNDP2
OASIS PortalCNDP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNDP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNDP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNDP2
DgiDB (Drug Gene Interaction Database)CNDP2
DoCM (Curated mutations)CNDP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNDP2 (select a term)
intoGenCNDP2
Cancer3DCNDP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM169800   
Orphanet
MedgenCNDP2
Genetic Testing Registry CNDP2
NextProtQ96KP4 [Medical]
TSGene55748
GENETestsCNDP2
Target ValidationCNDP2
Huge Navigator CNDP2 [HugePedia]
snp3D : Map Gene to Disease55748
BioCentury BCIQCNDP2
ClinGenCNDP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55748
Chemical/Pharm GKB GenePA134975242
Clinical trialCNDP2
Miscellaneous
canSAR (ICR)CNDP2 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNDP2
EVEXCNDP2
GoPubMedCNDP2
iHOPCNDP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:28:55 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.