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CNFN (cornifelin)

Identity

Alias_symbol (synonym)PLAC8L2
Other alias
HGNC (Hugo) CNFN
LocusID (NCBI) 84518
Atlas_Id 61931
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 42891171 and ends at 42894444 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LIPE (19q13.2) / CNFN (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNFN   30183
Cards
Entrez_Gene (NCBI)CNFN  84518  cornifelin
AliasesPLAC8L2
GeneCards (Weizmann)CNFN
Ensembl hg19 (Hinxton)ENSG00000105427 [Gene_View]  chr19:42891171-42894444 [Contig_View]  CNFN [Vega]
Ensembl hg38 (Hinxton)ENSG00000105427 [Gene_View]  chr19:42891171-42894444 [Contig_View]  CNFN [Vega]
ICGC DataPortalENSG00000105427
TCGA cBioPortalCNFN
AceView (NCBI)CNFN
Genatlas (Paris)CNFN
WikiGenes84518
SOURCE (Princeton)CNFN
Genetics Home Reference (NIH)CNFN
Genomic and cartography
GoldenPath hg19 (UCSC)CNFN  -     chr19:42891171-42894444 -  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CNFN  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblCNFN - 19q13.2 [CytoView hg19]  CNFN - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBICNFN [Mapview hg19]  CNFN [Mapview hg38]
OMIM611764   
Gene and transcription
Genbank (Entrez)AB049591 AK312080 BC101197 BC101198
RefSeq transcript (Entrez)NM_032488
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)CNFN
Cluster EST : UnigeneHs.148590 [ NCBI ]
CGAP (NCI)Hs.148590
Alternative Splicing GalleryENSG00000105427
Gene ExpressionCNFN [ NCBI-GEO ]   CNFN [ EBI - ARRAY_EXPRESS ]   CNFN [ SEEK ]   CNFN [ MEM ]
Gene Expression Viewer (FireBrowse)CNFN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84518
GTEX Portal (Tissue expression)CNFN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYD5
Splice isoforms : SwissVarQ9BYD5
PhosPhoSitePlusQ9BYD5
Domains : Interpro (EBI)Uncharacterised_Cys-rich   
Domain families : Pfam (Sanger)PLAC8 (PF04749)   
Domain families : Pfam (NCBI)pfam04749   
Conserved Domain (NCBI)CNFN
DMDM Disease mutations84518
Blocks (Seattle)CNFN
SuperfamilyQ9BYD5
Human Protein AtlasENSG00000105427
Peptide AtlasQ9BYD5
HPRD16729
IPIIPI00307412   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYD5
IntAct (EBI)Q9BYD5
FunCoupENSG00000105427
BioGRIDCNFN
STRING (EMBL)CNFN
ZODIACCNFN
Ontologies - Pathways
QuickGOQ9BYD5
Ontology : AmiGOcornified envelope  cytoplasm  keratinization  extracellular exosome  
Ontology : EGO-EBIcornified envelope  cytoplasm  keratinization  extracellular exosome  
NDEx NetworkCNFN
Atlas of Cancer Signalling NetworkCNFN
Wikipedia pathwaysCNFN
Orthology - Evolution
OrthoDB84518
GeneTree (enSembl)ENSG00000105427
Phylogenetic Trees/Animal Genes : TreeFamCNFN
HOVERGENQ9BYD5
HOGENOMQ9BYD5
Homologs : HomoloGeneCNFN
Homology/Alignments : Family Browser (UCSC)CNFN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNFN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNFN
dbVarCNFN
ClinVarCNFN
1000_GenomesCNFN 
Exome Variant ServerCNFN
ExAC (Exome Aggregation Consortium)CNFN (select the gene name)
Genetic variants : HAPMAP84518
Genomic Variants (DGV)CNFN [DGVbeta]
DECIPHER (Syndromes)19:42891171-42894444  ENSG00000105427
CONAN: Copy Number AnalysisCNFN 
Mutations
ICGC Data PortalCNFN 
TCGA Data PortalCNFN 
Broad Tumor PortalCNFN
OASIS PortalCNFN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNFN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNFN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNFN
DgiDB (Drug Gene Interaction Database)CNFN
DoCM (Curated mutations)CNFN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNFN (select a term)
intoGenCNFN
Cancer3DCNFN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611764   
Orphanet
MedgenCNFN
Genetic Testing Registry CNFN
NextProtQ9BYD5 [Medical]
TSGene84518
GENETestsCNFN
Huge Navigator CNFN [HugePedia]
snp3D : Map Gene to Disease84518
BioCentury BCIQCNFN
ClinGenCNFN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84518
Chemical/Pharm GKB GenePA134938429
Clinical trialCNFN
Miscellaneous
canSAR (ICR)CNFN (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNFN
EVEXCNFN
GoPubMedCNFN
iHOPCNFN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 11:59:48 CET 2017

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