Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CNGA1 (cyclic nucleotide gated channel alpha 1)

Identity

Alias_namesCNCG1
CNCG
Alias_symbol (synonym)RCNC1
RCNCa
CNG1
RP49
Other aliasCNG-1
RCNCalpha
HGNC (Hugo) CNGA1
LocusID (NCBI) 1259
Atlas_Id 61932
Location 4p12  [Link to chromosome band 4p12]
Location_base_pair Starts at 47935977 and ends at 48012944 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNGA1   2148
Cards
Entrez_Gene (NCBI)CNGA1  1259  cyclic nucleotide gated channel alpha 1
AliasesCNCG; CNCG1; CNG-1; CNG1; 
RCNC1; RCNCa; RCNCalpha; RP49
GeneCards (Weizmann)CNGA1
Ensembl hg19 (Hinxton)ENSG00000198515 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198515 [Gene_View]  chr4:47935977-48012944 [Contig_View]  CNGA1 [Vega]
ICGC DataPortalENSG00000198515
TCGA cBioPortalCNGA1
AceView (NCBI)CNGA1
Genatlas (Paris)CNGA1
WikiGenes1259
SOURCE (Princeton)CNGA1
Genetics Home Reference (NIH)CNGA1
Genomic and cartography
GoldenPath hg38 (UCSC)CNGA1  -     chr4:47935977-48012944 -  4p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNGA1  -     4p12   [Description]    (hg19-Feb_2009)
EnsemblCNGA1 - 4p12 [CytoView hg19]  CNGA1 - 4p12 [CytoView hg38]
Mapping of homologs : NCBICNGA1 [Mapview hg19]  CNGA1 [Mapview hg38]
OMIM123825   268000   613756   
Gene and transcription
Genbank (Entrez)AK292021 BC140399 M84741 S42457 W89170
RefSeq transcript (Entrez)NM_000087 NM_001142564
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNGA1
Cluster EST : UnigeneHs.1323 [ NCBI ]
CGAP (NCI)Hs.1323
Alternative Splicing GalleryENSG00000198515
Gene ExpressionCNGA1 [ NCBI-GEO ]   CNGA1 [ EBI - ARRAY_EXPRESS ]   CNGA1 [ SEEK ]   CNGA1 [ MEM ]
Gene Expression Viewer (FireBrowse)CNGA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1259
GTEX Portal (Tissue expression)CNGA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP29973   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP29973  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP29973
Splice isoforms : SwissVarP29973
PhosPhoSitePlusP29973
Domaine pattern : Prosite (Expaxy)CNMP_BINDING_1 (PS00888)    CNMP_BINDING_2 (PS00889)    CNMP_BINDING_3 (PS50042)   
Domains : Interpro (EBI)CLZ_dom    CNGA1    cNMP-bd-like    cNMP-bd_CS    cNMP-bd_dom    Ion_trans_dom    RmlC-like_jellyroll   
Domain families : Pfam (Sanger)CLZ (PF16526)    cNMP_binding (PF00027)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam16526    pfam00027    pfam00520   
Domain families : Smart (EMBL)cNMP (SM00100)  
Conserved Domain (NCBI)CNGA1
DMDM Disease mutations1259
Blocks (Seattle)CNGA1
SuperfamilyP29973
Human Protein AtlasENSG00000198515
Peptide AtlasP29973
HPRD00445
IPIIPI00218428   IPI00902617   IPI00966681   IPI00964585   
Protein Interaction databases
DIP (DOE-UCLA)P29973
IntAct (EBI)P29973
FunCoupENSG00000198515
BioGRIDCNGA1
STRING (EMBL)CNGA1
ZODIACCNGA1
Ontologies - Pathways
QuickGOP29973
Ontology : AmiGOintracellular cyclic nucleotide activated cation channel activity  voltage-gated potassium channel activity  protein binding  plasma membrane  integral component of plasma membrane  transport  visual perception  rhodopsin mediated signaling pathway  regulation of rhodopsin mediated signaling pathway  cGMP binding  regulation of membrane potential  photoreceptor outer segment membrane  potassium ion transmembrane transport  
Ontology : EGO-EBIintracellular cyclic nucleotide activated cation channel activity  voltage-gated potassium channel activity  protein binding  plasma membrane  integral component of plasma membrane  transport  visual perception  rhodopsin mediated signaling pathway  regulation of rhodopsin mediated signaling pathway  cGMP binding  regulation of membrane potential  photoreceptor outer segment membrane  potassium ion transmembrane transport  
Pathways : KEGGPhototransduction   
NDEx NetworkCNGA1
Atlas of Cancer Signalling NetworkCNGA1
Wikipedia pathwaysCNGA1
Orthology - Evolution
OrthoDB1259
GeneTree (enSembl)ENSG00000198515
Phylogenetic Trees/Animal Genes : TreeFamCNGA1
HOVERGENP29973
HOGENOMP29973
Homologs : HomoloGeneCNGA1
Homology/Alignments : Family Browser (UCSC)CNGA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNGA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNGA1
dbVarCNGA1
ClinVarCNGA1
1000_GenomesCNGA1 
Exome Variant ServerCNGA1
ExAC (Exome Aggregation Consortium)CNGA1 (select the gene name)
Genetic variants : HAPMAP1259
Genomic Variants (DGV)CNGA1 [DGVbeta]
DECIPHERCNGA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNGA1 
Mutations
ICGC Data PortalCNGA1 
TCGA Data PortalCNGA1 
Broad Tumor PortalCNGA1
OASIS PortalCNGA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNGA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNGA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch CNGA1
DgiDB (Drug Gene Interaction Database)CNGA1
DoCM (Curated mutations)CNGA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNGA1 (select a term)
intoGenCNGA1
Cancer3DCNGA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123825    268000    613756   
Orphanet659   
MedgenCNGA1
Genetic Testing Registry CNGA1
NextProtP29973 [Medical]
TSGene1259
GENETestsCNGA1
Target ValidationCNGA1
Huge Navigator CNGA1 [HugePedia]
snp3D : Map Gene to Disease1259
BioCentury BCIQCNGA1
ClinGenCNGA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1259
Chemical/Pharm GKB GenePA26658
Clinical trialCNGA1
Miscellaneous
canSAR (ICR)CNGA1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNGA1
EVEXCNGA1
GoPubMedCNGA1
iHOPCNGA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:12:32 CEST 2017

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