Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CNGA2 (cyclic nucleotide gated channel alpha 2)

Identity

Alias_namesCNCA1
CNCA
Alias_symbol (synonym)CNG2
OCNC1
OCNCa
OCNCALPHA
OCNCalpha
FLJ46312
Other alias
HGNC (Hugo) CNGA2
LocusID (NCBI) 1260
Atlas_Id 61933
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 151734746 and ends at 151745564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNGA2   2149
Cards
Entrez_Gene (NCBI)CNGA2  1260  cyclic nucleotide gated channel alpha 2
AliasesCNCA; CNCA1; CNG2; OCNC1; 
OCNCALPHA; OCNCa
GeneCards (Weizmann)CNGA2
Ensembl hg19 (Hinxton)ENSG00000183862 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183862 [Gene_View]  chrX:151734746-151745564 [Contig_View]  CNGA2 [Vega]
ICGC DataPortalENSG00000183862
TCGA cBioPortalCNGA2
AceView (NCBI)CNGA2
Genatlas (Paris)CNGA2
WikiGenes1260
SOURCE (Princeton)CNGA2
Genetics Home Reference (NIH)CNGA2
Genomic and cartography
GoldenPath hg38 (UCSC)CNGA2  -     chrX:151734746-151745564 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNGA2  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblCNGA2 - Xq28 [CytoView hg19]  CNGA2 - Xq28 [CytoView hg38]
Mapping of homologs : NCBICNGA2 [Mapview hg19]  CNGA2 [Mapview hg38]
OMIM300338   
Gene and transcription
Genbank (Entrez)AK128186 BC126302 BC126304
RefSeq transcript (Entrez)NM_005140
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNGA2
Cluster EST : UnigeneHs.447360 [ NCBI ]
CGAP (NCI)Hs.447360
Alternative Splicing GalleryENSG00000183862
Gene ExpressionCNGA2 [ NCBI-GEO ]   CNGA2 [ EBI - ARRAY_EXPRESS ]   CNGA2 [ SEEK ]   CNGA2 [ MEM ]
Gene Expression Viewer (FireBrowse)CNGA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1260
GTEX Portal (Tissue expression)CNGA2
Human Protein AtlasENSG00000183862-CNGA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16280   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16280  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16280
Splice isoforms : SwissVarQ16280
PhosPhoSitePlusQ16280
Domaine pattern : Prosite (Expaxy)CNMP_BINDING_1 (PS00888)    CNMP_BINDING_2 (PS00889)    CNMP_BINDING_3 (PS50042)   
Domains : Interpro (EBI)CLZ_dom    cNMP-bd-like    cNMP-bd_CS    cNMP-bd_dom    Ion_trans_dom    RmlC-like_jellyroll   
Domain families : Pfam (Sanger)CLZ (PF16526)    cNMP_binding (PF00027)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam16526    pfam00027    pfam00520   
Domain families : Smart (EMBL)cNMP (SM00100)  
Conserved Domain (NCBI)CNGA2
DMDM Disease mutations1260
Blocks (Seattle)CNGA2
SuperfamilyQ16280
Human Protein Atlas [tissue]ENSG00000183862-CNGA2 [tissue]
Peptide AtlasQ16280
HPRD08946
IPIIPI00399234   
Protein Interaction databases
DIP (DOE-UCLA)Q16280
IntAct (EBI)Q16280
FunCoupENSG00000183862
BioGRIDCNGA2
STRING (EMBL)CNGA2
ZODIACCNGA2
Ontologies - Pathways
QuickGOQ16280
Ontology : AmiGOGolgi membrane  voltage-gated potassium channel activity  calmodulin binding  integral component of plasma membrane  sensory perception of smell  cAMP binding  Golgi-associated vesicle membrane  regulation of membrane potential  response to stimulus  ciliary membrane  potassium ion transmembrane transport  
Ontology : EGO-EBIGolgi membrane  voltage-gated potassium channel activity  calmodulin binding  integral component of plasma membrane  sensory perception of smell  cAMP binding  Golgi-associated vesicle membrane  regulation of membrane potential  response to stimulus  ciliary membrane  potassium ion transmembrane transport  
NDEx NetworkCNGA2
Atlas of Cancer Signalling NetworkCNGA2
Wikipedia pathwaysCNGA2
Orthology - Evolution
OrthoDB1260
GeneTree (enSembl)ENSG00000183862
Phylogenetic Trees/Animal Genes : TreeFamCNGA2
HOVERGENQ16280
HOGENOMQ16280
Homologs : HomoloGeneCNGA2
Homology/Alignments : Family Browser (UCSC)CNGA2
Gene fusions - Rearrangements
Tumor Fusion PortalCNGA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNGA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNGA2
dbVarCNGA2
ClinVarCNGA2
1000_GenomesCNGA2 
Exome Variant ServerCNGA2
ExAC (Exome Aggregation Consortium)ENSG00000183862
GNOMAD BrowserENSG00000183862
Genetic variants : HAPMAP1260
Genomic Variants (DGV)CNGA2 [DGVbeta]
DECIPHERCNGA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNGA2 
Mutations
ICGC Data PortalCNGA2 
TCGA Data PortalCNGA2 
Broad Tumor PortalCNGA2
OASIS PortalCNGA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNGA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNGA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CNGA2
DgiDB (Drug Gene Interaction Database)CNGA2
DoCM (Curated mutations)CNGA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNGA2 (select a term)
intoGenCNGA2
Cancer3DCNGA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300338   
Orphanet11807   
DisGeNETCNGA2
MedgenCNGA2
Genetic Testing Registry CNGA2
NextProtQ16280 [Medical]
TSGene1260
GENETestsCNGA2
Target ValidationCNGA2
Huge Navigator CNGA2 [HugePedia]
snp3D : Map Gene to Disease1260
BioCentury BCIQCNGA2
ClinGenCNGA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1260
Chemical/Pharm GKB GenePA26659
Clinical trialCNGA2
Miscellaneous
canSAR (ICR)CNGA2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNGA2
EVEXCNGA2
GoPubMedCNGA2
iHOPCNGA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:24:31 CET 2017

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