Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CNGA3 (cyclic nucleotide gated channel alpha 3)

Identity

Other namesACHM2
CCNC1
CCNCa
CCNCalpha
CNCG3
CNG3
HGNC (Hugo) CNGA3
LocusID (NCBI) 1261
Location 2q11.2
Location_base_pair Starts at 98962618 and ends at 99015064 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)CNGA3   2150
Cards
Entrez_Gene (NCBI)CNGA3  1261  cyclic nucleotide gated channel alpha 3
GeneCards (Weizmann)CNGA3
Ensembl (Hinxton)ENSG00000144191 [Gene_View]  chr2:98962618-99015064 [Contig_View]  CNGA3 [Vega]
ICGC DataPortalENSG00000144191
cBioPortalCNGA3
AceView (NCBI)CNGA3
Genatlas (Paris)CNGA3
WikiGenes1261
SOURCE (Princeton)NM_001079878 NM_001298
Genomic and cartography
GoldenPath (UCSC)CNGA3  -  2q11.2   chr2:98962618-99015064 +  2q11.2   [Description]    (hg19-Feb_2009)
EnsemblCNGA3 - 2q11.2 [CytoView]
Mapping of homologs : NCBICNGA3 [Mapview]
OMIM216900   600053   
Gene and transcription
Genbank (Entrez)AF065314 AK131300 AK308149 BC096298 BC096299
RefSeq transcript (Entrez)NM_001079878 NM_001298
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NG_009097 NT_005403 NW_001838818 NW_004929303
Consensus coding sequences : CCDS (NCBI)CNGA3
Cluster EST : UnigeneHs.234785 [ NCBI ]
CGAP (NCI)Hs.234785
Alternative Splicing : Fast-db (Paris)GSHG0016700
Alternative Splicing GalleryENSG00000144191
Gene ExpressionCNGA3 [ NCBI-GEO ]     CNGA3 [ SEEK ]   CNGA3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16281 (Uniprot)
NextProtQ16281  [Medical]
With graphics : InterProQ16281
Splice isoforms : SwissVarQ16281 (Swissvar)
Domaine pattern : Prosite (Expaxy)CNMP_BINDING_1 (PS00888)    CNMP_BINDING_2 (PS00889)    CNMP_BINDING_3 (PS50042)   
Domains : Interpro (EBI)cNMP-bd-like [organisation]   cNMP-bd_CS [organisation]   cNMP-bd_dom [organisation]   Ion_trans_dom [organisation]   RmlC-like_jellyroll [organisation]  
Related proteins : CluSTrQ16281
Domain families : Pfam (Sanger)cNMP_binding (PF00027)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam00027    pfam00520   
Domain families : Smart (EMBL)cNMP (SM00100)  
DMDM Disease mutations1261
Blocks (Seattle)Q16281
PDB (SRS)3SWY   
PDB (PDBSum)3SWY   
PDB (IMB)3SWY   
PDB (RSDB)3SWY   
Human Protein AtlasENSG00000144191 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ16281
HPRD02504
IPIIPI00000812   IPI00816511   IPI00442261   
Protein Interaction databases
DIP (DOE-UCLA)Q16281
IntAct (EBI)Q16281
FunCoupENSG00000144191
BioGRIDCNGA3
InParanoidQ16281
Interologous Interaction database Q16281
IntegromeDBCNGA3
STRING (EMBL)CNGA3
Ontologies - Pathways
Ontology : AmiGOintracellular cAMP activated cation channel activity  intracellular cGMP activated cation channel activity  intracellular cGMP activated cation channel activity  voltage-gated potassium channel activity  cytoplasm  integral component of plasma membrane  transport  cation transport  signal transduction  visual perception  phototransduction, visible light  ligand-gated ion channel activity  dendrite  cGMP binding  cGMP binding  response to corticosteroid  response to magnesium ion  regulation of membrane potential  photoreceptor outer segment membrane  perikaryon  retinal cone cell development  response to cAMP  potassium ion transmembrane transport  transmembrane transporter complex  
Ontology : EGO-EBIintracellular cAMP activated cation channel activity  intracellular cGMP activated cation channel activity  intracellular cGMP activated cation channel activity  voltage-gated potassium channel activity  cytoplasm  integral component of plasma membrane  transport  cation transport  signal transduction  visual perception  phototransduction, visible light  ligand-gated ion channel activity  dendrite  cGMP binding  cGMP binding  response to corticosteroid  response to magnesium ion  regulation of membrane potential  photoreceptor outer segment membrane  perikaryon  retinal cone cell development  response to cAMP  potassium ion transmembrane transport  transmembrane transporter complex  
Pathways : KEGGOlfactory transduction   
Protein Interaction DatabaseCNGA3
Wikipedia pathwaysCNGA3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CNGA3
snp3D : Map Gene to Disease1261
SNP (GeneSNP Utah)CNGA3
SNP : HGBaseCNGA3
Genetic variants : HAPMAPCNGA3
Exome VariantCNGA3
1000_GenomesCNGA3 
ICGC programENSG00000144191 
Somatic Mutations in Cancer : COSMICCNGA3 
CONAN: Copy Number AnalysisCNGA3 
Mutations and Diseases : HGMDCNGA3
Genomic VariantsCNGA3  CNGA3 [DGVbeta]
dbVarCNGA3
ClinVarCNGA3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM216900    600053   
MedgenCNGA3
GENETestsCNGA3
Disease Genetic AssociationCNGA3
Huge Navigator CNGA3 [HugePedia]  CNGA3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCNGA3
Homology/Alignments : Family Browser (UCSC)CNGA3
Phylogenetic Trees/Animal Genes : TreeFamCNGA3
Chemical/Protein Interactions : CTD1261
Chemical/Pharm GKB GenePA26660
Clinical trialCNGA3
Cancer Resource (Charite)ENSG00000144191
Other databases
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
CoreMineCNGA3
iHOPCNGA3
OncoSearchCNGA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:48:54 CEST 2014

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