Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CNGA4 (cyclic nucleotide gated channel alpha 4)

Identity

Alias_namesCNCA2
CNGB2
cyclic nucleotide gated channel beta 2
Alias_symbol (synonym)OCNC2
OCNCb
CNG5
Other aliasCNG-4
CNG4
OCNCBETA
HGNC (Hugo) CNGA4
LocusID (NCBI) 1262
Atlas_Id 61934
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6239092 and ends at 6244477 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CNGA4   2152
Cards
Entrez_Gene (NCBI)CNGA4  1262  cyclic nucleotide gated channel alpha 4
AliasesCNCA2; CNG-4; CNG4; CNG5; 
CNGB2; OCNC2; OCNCBETA; OCNCb
GeneCards (Weizmann)CNGA4
Ensembl hg19 (Hinxton)ENSG00000132259 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132259 [Gene_View]  ENSG00000132259 [Sequence]  chr11:6239092-6244477 [Contig_View]  CNGA4 [Vega]
ICGC DataPortalENSG00000132259
TCGA cBioPortalCNGA4
AceView (NCBI)CNGA4
Genatlas (Paris)CNGA4
WikiGenes1262
SOURCE (Princeton)CNGA4
Genetics Home Reference (NIH)CNGA4
Genomic and cartography
GoldenPath hg38 (UCSC)CNGA4  -     chr11:6239092-6244477 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNGA4  -     11p15.4   [Description]    (hg19-Feb_2009)
CNGA4 - 11p15.4 [CytoView hg19]  CNGA4 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBICNGA4 [Mapview hg19]  CNGA4 [Mapview hg38]
OMIM609472   
Gene and transcription
Genbank (Entrez)AK122736 AK302551 BC040277 BC106935 BC106936
RefSeq transcript (Entrez)NM_001037329
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNGA4
Cluster EST : UnigeneHs.434618 [ NCBI ]
CGAP (NCI)Hs.434618
Alternative Splicing GalleryENSG00000132259
Gene ExpressionCNGA4 [ NCBI-GEO ]   CNGA4 [ EBI - ARRAY_EXPRESS ]   CNGA4 [ SEEK ]   CNGA4 [ MEM ]
Gene Expression Viewer (FireBrowse)CNGA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1262
GTEX Portal (Tissue expression)CNGA4
Human Protein AtlasENSG00000132259-CNGA4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV77
Splice isoforms : SwissVarQ8IV77
PhosPhoSitePlusQ8IV77
Domaine pattern : Prosite (Expaxy)CNMP_BINDING_1 (PS00888)    CNMP_BINDING_2 (PS00889)    CNMP_BINDING_3 (PS50042)   
Domains : Interpro (EBI)CLZ_dom    cNMP-bd-like    cNMP-bd_CS    cNMP-bd_dom    Ion_trans_dom    RmlC-like_jellyroll   
Domain families : Pfam (Sanger)CLZ (PF16526)    cNMP_binding (PF00027)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam16526    pfam00027    pfam00520   
Domain families : Smart (EMBL)cNMP (SM00100)  
Conserved Domain (NCBI)CNGA4
DMDM Disease mutations1262
Blocks (Seattle)CNGA4
SuperfamilyQ8IV77
Human Protein Atlas [tissue]ENSG00000132259-CNGA4 [tissue]
Peptide AtlasQ8IV77
HPRD18724
IPIIPI00216905   IPI00970995   IPI00908890   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV77
IntAct (EBI)Q8IV77
FunCoupENSG00000132259
BioGRIDCNGA4
STRING (EMBL)CNGA4
ZODIACCNGA4
Ontologies - Pathways
QuickGOQ8IV77
Ontology : AmiGOGolgi membrane  voltage-gated potassium channel activity  integral component of plasma membrane  sensory perception of smell  cAMP binding  Golgi-associated vesicle membrane  regulation of membrane potential  response to stimulus  ciliary membrane  potassium ion transmembrane transport  
Ontology : EGO-EBIGolgi membrane  voltage-gated potassium channel activity  integral component of plasma membrane  sensory perception of smell  cAMP binding  Golgi-associated vesicle membrane  regulation of membrane potential  response to stimulus  ciliary membrane  potassium ion transmembrane transport  
Pathways : KEGGOlfactory transduction   
NDEx NetworkCNGA4
Atlas of Cancer Signalling NetworkCNGA4
Wikipedia pathwaysCNGA4
Orthology - Evolution
OrthoDB1262
GeneTree (enSembl)ENSG00000132259
Phylogenetic Trees/Animal Genes : TreeFamCNGA4
HOGENOMQ8IV77
Homologs : HomoloGeneCNGA4
Homology/Alignments : Family Browser (UCSC)CNGA4
Gene fusions - Rearrangements
Fusion : QuiverCNGA4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNGA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNGA4
dbVarCNGA4
ClinVarCNGA4
1000_GenomesCNGA4 
Exome Variant ServerCNGA4
ExAC (Exome Aggregation Consortium)ENSG00000132259
GNOMAD BrowserENSG00000132259
Varsome BrowserCNGA4
Genetic variants : HAPMAP1262
Genomic Variants (DGV)CNGA4 [DGVbeta]
DECIPHERCNGA4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNGA4 
Mutations
ICGC Data PortalCNGA4 
TCGA Data PortalCNGA4 
Broad Tumor PortalCNGA4
OASIS PortalCNGA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNGA4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNGA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNGA4
DgiDB (Drug Gene Interaction Database)CNGA4
DoCM (Curated mutations)CNGA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNGA4 (select a term)
intoGenCNGA4
Cancer3DCNGA4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609472   
Orphanet
DisGeNETCNGA4
MedgenCNGA4
Genetic Testing Registry CNGA4
NextProtQ8IV77 [Medical]
TSGene1262
GENETestsCNGA4
Target ValidationCNGA4
Huge Navigator CNGA4 [HugePedia]
snp3D : Map Gene to Disease1262
BioCentury BCIQCNGA4
ClinGenCNGA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1262
Chemical/Pharm GKB GenePA26661
Clinical trialCNGA4
Miscellaneous
canSAR (ICR)CNGA4 (select the gene name)
DataMed IndexCNGA4
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNGA4
EVEXCNGA4
GoPubMedCNGA4
iHOPCNGA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 21 14:40:51 CET 2019
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