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CNGB3 (cyclic nucleotide gated channel beta 3)

Identity

Other namesACHM1
HGNC (Hugo) CNGB3
LocusID (NCBI) 54714
Location 8q21.3
Location_base_pair Starts at 87586163 and ends at 87755903 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CNGB3   2153
Entrez_Gene (NCBI)CNGB3  54714  cyclic nucleotide gated channel beta 3
Cards
GeneCards (Weizmann)CNGB3
Ensembl (Hinxton)ENSG00000170289 [Gene_View]  chr8:87586163-87755903 [Contig_View]  CNGB3 [Vega]
AceView (NCBI)CNGB3
Genatlas (Paris)CNGB3
SOURCE (Stanford)NM_019098
Genomic and cartography
GoldenPath (UCSC)CNGB3  -  8q21.3   chr8:87586163-87755903 -  8q21.3   [Description]    (hg19-Feb_2009)
EnsemblCNGB3 - 8q21.3 [CytoView]
Mapping of homologs : NCBICNGB3 [Mapview]
OMIM248200   262300   605080   
Gene and transcription
Genbank (Entrez)AF228520 AF272900 AL713036 BC150601 BX118844
RefSeq transcript (SRS)NM_019098
RefSeq transcript (Entrez)NM_019098
RefSeq genomic (SRS)AC_000140 NC_000008 NC_018919 NG_016980 NT_008046 NW_001839136 NW_004078037
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NG_016980 NT_008046 NW_001839136 NW_004078037
Consensus coding sequences : CCDS (NCBI)CNGB3
Cluster EST : UnigeneHs.154433 [ SRS ] Hs.154433 [ NCBI ]
CGAP (NCI)Hs.154433
Alternative Splicing : Fast-db (Paris)GSHG0029697
Alternative Splicing GalleryENSG00000170289
Gene ExpressionCNGB3 [ NCBI-GEO ]   CNGB3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQW8 (SRS) Q9NQW8 (Uniprot)
NextProtQ9NQW8
With graphics : InterProQ9NQW8
Splice isoforms : SwissVarQ9NQW8(Swissvar)
Domaine pattern : Prosite (SRS)CNMP_BINDING_1 (PS00888)    CNMP_BINDING_2 (PS00889)    CNMP_BINDING_3 (PS50042)   
Domaine pattern : Prosite (Expaxy)CNMP_BINDING_1 (PS00888)    CNMP_BINDING_2 (PS00889)    CNMP_BINDING_3 (PS50042)   
Domains : Interpro (SRS)cNMP-bd-like    cNMP-bd_CS    cNMP-bd_dom    Ion_trans_dom    RmlC-like_jellyroll   
Domains : Interpro (EBI)cNMP-bd-like    cNMP-bd_CS    cNMP-bd_dom    Ion_trans_dom    RmlC-like_jellyroll   
Related proteins : CluSTrQ9NQW8
Domain families : Pfam (SRS)cNMP_binding (PF00027)    Ion_trans (PF00520)   
Domain families : Pfam (Sanger)cNMP_binding (PF00027)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam00027    pfam00520   
Domain families : Smart (EMBL)cNMP (SM00100)  
DMDM54714
Blocks (Seattle)Q9NQW8
Human Protein AtlasENSG00000170289
HPRD05468
IPIIPI00746960   IPI00409767   IPI00981617   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQW8
IntAct (EBI)Q9NQW8
FunCoupENSG00000170289
REACTOMECNGB3
Protein Interaction Database54714
BioGRIDCNGB3
InParanoidQ9NQW8
Interologous Interaction database Q9NQW8
IntegromeDBCNGB3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CNGB3
SNP (GeneSNP Utah)CNGB3
SNP : HGBaseCNGB3
Genetic variants : HAPMAPCNGB3
Somatic Mutations in Cancer : COSMICCNGB3 
CONAN: Copy Number AnalysisCNGB3 
Mutations and Diseases : HGMDCNGB3
OMIM248200    262300    605080   
GENETests248200    262300    605080   
Disease Genetic AssociationCNGB3
Huge Navigator CNGB3 [HugePedia]  CNGB3 [HugeCancerGEM]
Genomic VariantsCNGB3  CNGB3 [DGVbeta]
snp3D : Map Gene to Disease54714
General knowledge
Homologs : HomoloGeneCNGB3
Homology/Alignments : Family Browser (UCSC)CNGB3
Phylogenetic Trees/Animal Genes : TreeFamCNGB3
Chemical/Protein Interactions : CTD54714
Chemical/Pharm GKB GenePA26663
Clinical trialCNGB3
Cancer Resource (Charite)ENSG00000170289
Ontology : AmiGOphotoreceptor outer segment  intracellular cGMP activated cation channel activity  transport  signal transduction  visual perception  integral to membrane  cGMP binding  
Ontology : EGO-EBIphotoreceptor outer segment  intracellular cGMP activated cation channel activity  transport  signal transduction  visual perception  integral to membrane  cGMP binding  
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
PubGeneCNGB3
iHOPCNGB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:33:23 CEST 2013
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