Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CNIH1 (cornichon family AMPA receptor auxiliary protein 1)

Identity

Alias (NCBI)CNIH
CNIH-1
CNIL
TGAM77
HGNC (Hugo) CNIH1
HGNC Alias symbTGAM77
CNIL
HGNC Previous nameCNIH
HGNC Previous namecornichon homolog (Drosophila)
LocusID (NCBI) 10175
Atlas_Id 61935
Location 14q22.2  [Link to chromosome band 14q22]
Location_base_pair Starts at 54423561 and ends at 54441374 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNIH1 (14q22.2) / NRXN3 (14q31.1)CNIH1 (14q22.2) / QARS (3p21.31)TCIRG1 (11q13.2) / CNIH1 (14q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CNIH1   19431
Cards
Entrez_Gene (NCBI)CNIH1    cornichon family AMPA receptor auxiliary protein 1
AliasesCNIH; CNIH-1; CNIL; TGAM77
GeneCards (Weizmann)CNIH1
Ensembl hg19 (Hinxton)ENSG00000100528 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100528 [Gene_View]  ENSG00000100528 [Sequence]  chr14:54423561-54441374 [Contig_View]  CNIH1 [Vega]
ICGC DataPortalENSG00000100528
TCGA cBioPortalCNIH1
AceView (NCBI)CNIH1
Genatlas (Paris)CNIH1
SOURCE (Princeton)CNIH1
Genetics Home Reference (NIH)CNIH1
Genomic and cartography
GoldenPath hg38 (UCSC)CNIH1  -     chr14:54423561-54441374 -  14q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNIH1  -     14q22.2   [Description]    (hg19-Feb_2009)
GoldenPathCNIH1 - 14q22.2 [CytoView hg19]  CNIH1 - 14q22.2 [CytoView hg38]
ImmunoBaseENSG00000100528
Genome Data Viewer NCBICNIH1 [Mapview hg19]  
OMIM611287   
Gene and transcription
Genbank (Entrez)AF070654 AF104398 AK022936 AK074781 AK307074
RefSeq transcript (Entrez)NM_001009551 NM_005776
Consensus coding sequences : CCDS (NCBI)CNIH1
Gene ExpressionCNIH1 [ NCBI-GEO ]   CNIH1 [ EBI - ARRAY_EXPRESS ]   CNIH1 [ SEEK ]   CNIH1 [ MEM ]
Gene Expression Viewer (FireBrowse)CNIH1 [ Firebrowse - Broad ]
GenevisibleExpression of CNIH1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10175
GTEX Portal (Tissue expression)CNIH1
Human Protein AtlasENSG00000100528-CNIH1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95406   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95406  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95406
PhosPhoSitePlusO95406
Domaine pattern : Prosite (Expaxy)CORNICHON (PS01340)   
Domains : Interpro (EBI)Cornichon    Cornichon_conserved   
Domain families : Pfam (Sanger)Cornichon (PF03311)   
Domain families : Pfam (NCBI)pfam03311   
Domain families : Smart (EMBL)Cornichon (SM01398)  
Conserved Domain (NCBI)CNIH1
SuperfamilyO95406
AlphaFold pdb e-kbO95406   
Human Protein Atlas [tissue]ENSG00000100528-CNIH1 [tissue]
HPRD16730
Protein Interaction databases
DIP (DOE-UCLA)O95406
IntAct (EBI)O95406
BioGRIDCNIH1
STRING (EMBL)CNIH1
ZODIACCNIH1
Ontologies - Pathways
QuickGOO95406
Ontology : AmiGOGolgi membrane  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum to Golgi vesicle-mediated transport  immune response  signal transduction  ER to Golgi transport vesicle membrane  integral component of membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  COPII vesicle coating  
Ontology : EGO-EBIGolgi membrane  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum to Golgi vesicle-mediated transport  immune response  signal transduction  ER to Golgi transport vesicle membrane  integral component of membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  COPII vesicle coating  
NDEx NetworkCNIH1
Atlas of Cancer Signalling NetworkCNIH1
Wikipedia pathwaysCNIH1
Orthology - Evolution
OrthoDB10175
GeneTree (enSembl)ENSG00000100528
Phylogenetic Trees/Animal Genes : TreeFamCNIH1
Homologs : HomoloGeneCNIH1
Homology/Alignments : Family Browser (UCSC)CNIH1
Gene fusions - Rearrangements
Fusion : QuiverCNIH1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNIH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNIH1
dbVarCNIH1
ClinVarCNIH1
MonarchCNIH1
1000_GenomesCNIH1 
Exome Variant ServerCNIH1
GNOMAD BrowserENSG00000100528
Varsome BrowserCNIH1
ACMGCNIH1 variants
VarityO95406
Genomic Variants (DGV)CNIH1 [DGVbeta]
DECIPHERCNIH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNIH1 
Mutations
ICGC Data PortalCNIH1 
TCGA Data PortalCNIH1 
Broad Tumor PortalCNIH1
OASIS PortalCNIH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNIH1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCNIH1
Mutations and Diseases : HGMDCNIH1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCNIH1
DgiDB (Drug Gene Interaction Database)CNIH1
DoCM (Curated mutations)CNIH1
CIViC (Clinical Interpretations of Variants in Cancer)CNIH1
Cancer3DCNIH1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611287   
Orphanet
DisGeNETCNIH1
MedgenCNIH1
Genetic Testing Registry CNIH1
NextProtO95406 [Medical]
GENETestsCNIH1
Target ValidationCNIH1
Huge Navigator CNIH1 [HugePedia]
ClinGenCNIH1
Clinical trials, drugs, therapy
MyCancerGenomeCNIH1
Protein Interactions : CTDCNIH1
Pharm GKB GenePA134864821
PharosO95406
Clinical trialCNIH1
Miscellaneous
canSAR (ICR)CNIH1
HarmonizomeCNIH1
DataMed IndexCNIH1
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCNIH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:46:24 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.