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CNIH1 (cornichon family AMPA receptor auxiliary protein 1)

Identity

Alias_namesCNIH
cornichon homolog (Drosophila)
Alias_symbol (synonym)TGAM77
CNIL
Other aliasCNIH-1
HGNC (Hugo) CNIH1
LocusID (NCBI) 10175
Atlas_Id 61935
Location 14q22.2  [Link to chromosome band 14q22]
Location_base_pair Starts at 54426929 and ends at 54441430 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CNIH1 (14q22.2) / NRXN3 (14q31.1)CNIH1 (14q22.2) / QARS (3p21.31)TCIRG1 (11q13.2) / CNIH1 (14q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNIH1   19431
Cards
Entrez_Gene (NCBI)CNIH1  10175  cornichon family AMPA receptor auxiliary protein 1
AliasesCNIH; CNIH-1; CNIL; TGAM77
GeneCards (Weizmann)CNIH1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:54426929-54441430 [Contig_View]  CNIH1 [Vega]
TCGA cBioPortalCNIH1
AceView (NCBI)CNIH1
Genatlas (Paris)CNIH1
WikiGenes10175
SOURCE (Princeton)CNIH1
Genetics Home Reference (NIH)CNIH1
Genomic and cartography
GoldenPath hg38 (UCSC)CNIH1  -     chr14:54426929-54441430 -  14q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNIH1  -     14q22.2   [Description]    (hg19-Feb_2009)
EnsemblCNIH1 - 14q22.2 [CytoView hg19]  CNIH1 - 14q22.2 [CytoView hg38]
Mapping of homologs : NCBICNIH1 [Mapview hg19]  CNIH1 [Mapview hg38]
OMIM611287   
Gene and transcription
Genbank (Entrez)AF070654 AF104398 AK022936 AK074781 AK307074
RefSeq transcript (Entrez)NM_001009551 NM_005776
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNIH1
Cluster EST : UnigeneHs.594424 [ NCBI ]
CGAP (NCI)Hs.594424
Gene ExpressionCNIH1 [ NCBI-GEO ]   CNIH1 [ EBI - ARRAY_EXPRESS ]   CNIH1 [ SEEK ]   CNIH1 [ MEM ]
Gene Expression Viewer (FireBrowse)CNIH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10175
GTEX Portal (Tissue expression)CNIH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95406   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95406  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95406
Splice isoforms : SwissVarO95406
PhosPhoSitePlusO95406
Domaine pattern : Prosite (Expaxy)CORNICHON (PS01340)   
Domains : Interpro (EBI)Cornichon    Cornichon_conserved   
Domain families : Pfam (Sanger)Cornichon (PF03311)   
Domain families : Pfam (NCBI)pfam03311   
Domain families : Smart (EMBL)Cornichon (SM01398)  
Conserved Domain (NCBI)CNIH1
DMDM Disease mutations10175
Blocks (Seattle)CNIH1
SuperfamilyO95406
Peptide AtlasO95406
HPRD16730
IPIIPI00030649   IPI00872779   IPI01025823   IPI01025444   IPI01025584   IPI01025196   IPI01025321   
Protein Interaction databases
DIP (DOE-UCLA)O95406
IntAct (EBI)O95406
BioGRIDCNIH1
STRING (EMBL)CNIH1
ZODIACCNIH1
Ontologies - Pathways
QuickGOO95406
Ontology : AmiGOGolgi membrane  endoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  immune response  signal transduction  ER to Golgi transport vesicle membrane  integral component of membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  COPII vesicle coating  
Ontology : EGO-EBIGolgi membrane  endoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  immune response  signal transduction  ER to Golgi transport vesicle membrane  integral component of membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  COPII vesicle coating  
NDEx NetworkCNIH1
Atlas of Cancer Signalling NetworkCNIH1
Wikipedia pathwaysCNIH1
Orthology - Evolution
OrthoDB10175
Phylogenetic Trees/Animal Genes : TreeFamCNIH1
HOVERGENO95406
HOGENOMO95406
Homologs : HomoloGeneCNIH1
Homology/Alignments : Family Browser (UCSC)CNIH1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNIH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNIH1
dbVarCNIH1
ClinVarCNIH1
1000_GenomesCNIH1 
Exome Variant ServerCNIH1
ExAC (Exome Aggregation Consortium)CNIH1 (select the gene name)
Genetic variants : HAPMAP10175
Genomic Variants (DGV)CNIH1 [DGVbeta]
DECIPHERCNIH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNIH1 
Mutations
ICGC Data PortalCNIH1 
TCGA Data PortalCNIH1 
Broad Tumor PortalCNIH1
OASIS PortalCNIH1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCNIH1
BioMutasearch CNIH1
DgiDB (Drug Gene Interaction Database)CNIH1
DoCM (Curated mutations)CNIH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNIH1 (select a term)
intoGenCNIH1
Cancer3DCNIH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611287   
Orphanet
MedgenCNIH1
Genetic Testing Registry CNIH1
NextProtO95406 [Medical]
TSGene10175
GENETestsCNIH1
Target ValidationCNIH1
Huge Navigator CNIH1 [HugePedia]
snp3D : Map Gene to Disease10175
BioCentury BCIQCNIH1
ClinGenCNIH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10175
Chemical/Pharm GKB GenePA134864821
Clinical trialCNIH1
Miscellaneous
canSAR (ICR)CNIH1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNIH1
EVEXCNIH1
GoPubMedCNIH1
iHOPCNIH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:02 CEST 2017

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