Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CNIH3 (cornichon family AMPA receptor auxiliary protein 3)

Identity

Alias (NCBI)CNIH-3
HGNC (Hugo) CNIH3
HGNC Alias symbFLJ38993
CNIH-3
HGNC Previous namecornichon homolog 3 (Drosophila)
LocusID (NCBI) 149111
Atlas_Id 61937
Location 1q42.12  [Link to chromosome band 1q42]
Location_base_pair Starts at 224616317 and ends at 224740554 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RB1 (13q14.2) / CNIH3 (1q42.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CNIH3   26802
Cards
Entrez_Gene (NCBI)CNIH3    cornichon family AMPA receptor auxiliary protein 3
AliasesCNIH-3
GeneCards (Weizmann)CNIH3
Ensembl hg19 (Hinxton)ENSG00000143786 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143786 [Gene_View]  ENSG00000143786 [Sequence]  chr1:224616317-224740554 [Contig_View]  CNIH3 [Vega]
ICGC DataPortalENSG00000143786
TCGA cBioPortalCNIH3
AceView (NCBI)CNIH3
Genatlas (Paris)CNIH3
SOURCE (Princeton)CNIH3
Genetics Home Reference (NIH)CNIH3
Genomic and cartography
GoldenPath hg38 (UCSC)CNIH3  -     chr1:224616317-224740554 +  1q42.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNIH3  -     1q42.12   [Description]    (hg19-Feb_2009)
GoldenPathCNIH3 - 1q42.12 [CytoView hg19]  CNIH3 - 1q42.12 [CytoView hg38]
ImmunoBaseENSG00000143786
genome Data Viewer NCBICNIH3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF070524 AK096312 BC022780 OA985626
RefSeq transcript (Entrez)NM_001322302 NM_001322303 NM_001322304 NM_001322305 NM_152495
Consensus coding sequences : CCDS (NCBI)CNIH3
Alternative Splicing GalleryENSG00000143786
Gene ExpressionCNIH3 [ NCBI-GEO ]   CNIH3 [ EBI - ARRAY_EXPRESS ]   CNIH3 [ SEEK ]   CNIH3 [ MEM ]
Gene Expression Viewer (FireBrowse)CNIH3 [ Firebrowse - Broad ]
GenevisibleExpression of CNIH3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149111
GTEX Portal (Tissue expression)CNIH3
Human Protein AtlasENSG00000143786-CNIH3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBE1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBE1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBE1
PhosPhoSitePlusQ8TBE1
Domaine pattern : Prosite (Expaxy)CORNICHON (PS01340)   
Domains : Interpro (EBI)Cornichon    Cornichon_conserved   
Domain families : Pfam (Sanger)Cornichon (PF03311)   
Domain families : Pfam (NCBI)pfam03311   
Domain families : Smart (EMBL)Cornichon (SM01398)  
Conserved Domain (NCBI)CNIH3
SuperfamilyQ8TBE1
AlphaFold pdb e-kbQ8TBE1   
Human Protein Atlas [tissue]ENSG00000143786-CNIH3 [tissue]
HPRD08799
Protein Interaction databases
DIP (DOE-UCLA)Q8TBE1
IntAct (EBI)Q8TBE1
BioGRIDCNIH3
STRING (EMBL)CNIH3
ZODIACCNIH3
Ontologies - Pathways
QuickGOQ8TBE1
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  endoplasmic reticulum to Golgi vesicle-mediated transport  ER to Golgi transport vesicle membrane  channel regulator activity  dendrite  AMPA glutamate receptor complex  endoplasmic reticulum-Golgi intermediate compartment membrane  synaptic transmission, glutamatergic  regulation of membrane potential  dendritic shaft  synapse  postsynaptic membrane  COPII vesicle coating  regulation of AMPA receptor activity  regulation of AMPA receptor activity  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  endoplasmic reticulum to Golgi vesicle-mediated transport  ER to Golgi transport vesicle membrane  channel regulator activity  dendrite  AMPA glutamate receptor complex  endoplasmic reticulum-Golgi intermediate compartment membrane  synaptic transmission, glutamatergic  regulation of membrane potential  dendritic shaft  synapse  postsynaptic membrane  COPII vesicle coating  regulation of AMPA receptor activity  regulation of AMPA receptor activity  
NDEx NetworkCNIH3
Atlas of Cancer Signalling NetworkCNIH3
Wikipedia pathwaysCNIH3
Orthology - Evolution
OrthoDB149111
GeneTree (enSembl)ENSG00000143786
Phylogenetic Trees/Animal Genes : TreeFamCNIH3
Homologs : HomoloGeneCNIH3
Homology/Alignments : Family Browser (UCSC)CNIH3
Gene fusions - Rearrangements
Fusion : QuiverCNIH3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNIH3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNIH3
dbVarCNIH3
ClinVarCNIH3
MonarchCNIH3
1000_GenomesCNIH3 
Exome Variant ServerCNIH3
GNOMAD BrowserENSG00000143786
Varsome BrowserCNIH3
Genomic Variants (DGV)CNIH3 [DGVbeta]
DECIPHERCNIH3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNIH3 
Mutations
ICGC Data PortalCNIH3 
TCGA Data PortalCNIH3 
Broad Tumor PortalCNIH3
OASIS PortalCNIH3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNIH3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCNIH3
Mutations and Diseases : HGMDCNIH3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutasearch CNIH3
DgiDB (Drug Gene Interaction Database)CNIH3
DoCM (Curated mutations)CNIH3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNIH3 (select a term)
Cancer3DCNIH3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCNIH3
MedgenCNIH3
Genetic Testing Registry CNIH3
NextProtQ8TBE1 [Medical]
GENETestsCNIH3
Target ValidationCNIH3
Huge Navigator CNIH3 [HugePedia]
ClinGenCNIH3
Clinical trials, drugs, therapy
MyCancerGenomeCNIH3
Protein Interactions : CTDCNIH3
Pharm GKB GenePA134929862
PharosQ8TBE1
Clinical trialCNIH3
Miscellaneous
canSAR (ICR)CNIH3
HarmonizomeCNIH3
DataMed IndexCNIH3
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCNIH3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Sep 15 22:52:31 CEST 2021

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