Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CNIH3 (cornichon family AMPA receptor auxiliary protein 3)

Identity

Alias_namescornichon homolog 3 (Drosophila)
Alias_symbol (synonym)FLJ38993
CNIH-3
Other alias
HGNC (Hugo) CNIH3
LocusID (NCBI) 149111
Atlas_Id 61937
Location 1q42.12  [Link to chromosome band 1q42]
Location_base_pair Starts at 224434895 and ends at 224740549 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RB1 (13q14.2) / CNIH3 (1q42.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNIH3   26802
Cards
Entrez_Gene (NCBI)CNIH3  149111  cornichon family AMPA receptor auxiliary protein 3
AliasesCNIH-3
GeneCards (Weizmann)CNIH3
Ensembl hg19 (Hinxton)ENSG00000143786 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143786 [Gene_View]  chr1:224434895-224740549 [Contig_View]  CNIH3 [Vega]
ICGC DataPortalENSG00000143786
TCGA cBioPortalCNIH3
AceView (NCBI)CNIH3
Genatlas (Paris)CNIH3
WikiGenes149111
SOURCE (Princeton)CNIH3
Genetics Home Reference (NIH)CNIH3
Genomic and cartography
GoldenPath hg38 (UCSC)CNIH3  -     chr1:224434895-224740549 +  1q42.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNIH3  -     1q42.12   [Description]    (hg19-Feb_2009)
EnsemblCNIH3 - 1q42.12 [CytoView hg19]  CNIH3 - 1q42.12 [CytoView hg38]
Mapping of homologs : NCBICNIH3 [Mapview hg19]  CNIH3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF070524 AK096312 BC022780 HQ447327
RefSeq transcript (Entrez)NM_001322302 NM_001322303 NM_001322304 NM_001322305 NM_152495
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNIH3
Cluster EST : UnigeneHs.731723 [ NCBI ]
CGAP (NCI)Hs.731723
Alternative Splicing GalleryENSG00000143786
Gene ExpressionCNIH3 [ NCBI-GEO ]   CNIH3 [ EBI - ARRAY_EXPRESS ]   CNIH3 [ SEEK ]   CNIH3 [ MEM ]
Gene Expression Viewer (FireBrowse)CNIH3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149111
GTEX Portal (Tissue expression)CNIH3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBE1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBE1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBE1
Splice isoforms : SwissVarQ8TBE1
PhosPhoSitePlusQ8TBE1
Domaine pattern : Prosite (Expaxy)CORNICHON (PS01340)   
Domains : Interpro (EBI)Cornichon    Cornichon_conserved   
Domain families : Pfam (Sanger)Cornichon (PF03311)   
Domain families : Pfam (NCBI)pfam03311   
Domain families : Smart (EMBL)Cornichon (SM01398)  
Conserved Domain (NCBI)CNIH3
DMDM Disease mutations149111
Blocks (Seattle)CNIH3
SuperfamilyQ8TBE1
Human Protein AtlasENSG00000143786
Peptide AtlasQ8TBE1
HPRD08799
IPIIPI00152192   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBE1
IntAct (EBI)Q8TBE1
FunCoupENSG00000143786
BioGRIDCNIH3
STRING (EMBL)CNIH3
ZODIACCNIH3
Ontologies - Pathways
QuickGOQ8TBE1
Ontology : AmiGOGolgi membrane  endoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  ER to Golgi transport vesicle membrane  channel regulator activity  cell junction  AMPA glutamate receptor complex  endoplasmic reticulum-Golgi intermediate compartment membrane  synaptic transmission, glutamatergic  regulation of membrane potential  dendritic shaft  postsynaptic membrane  COPII vesicle coating  regulation of AMPA receptor activity  
Ontology : EGO-EBIGolgi membrane  endoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  ER to Golgi transport vesicle membrane  channel regulator activity  cell junction  AMPA glutamate receptor complex  endoplasmic reticulum-Golgi intermediate compartment membrane  synaptic transmission, glutamatergic  regulation of membrane potential  dendritic shaft  postsynaptic membrane  COPII vesicle coating  regulation of AMPA receptor activity  
NDEx NetworkCNIH3
Atlas of Cancer Signalling NetworkCNIH3
Wikipedia pathwaysCNIH3
Orthology - Evolution
OrthoDB149111
GeneTree (enSembl)ENSG00000143786
Phylogenetic Trees/Animal Genes : TreeFamCNIH3
HOVERGENQ8TBE1
HOGENOMQ8TBE1
Homologs : HomoloGeneCNIH3
Homology/Alignments : Family Browser (UCSC)CNIH3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNIH3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNIH3
dbVarCNIH3
ClinVarCNIH3
1000_GenomesCNIH3 
Exome Variant ServerCNIH3
ExAC (Exome Aggregation Consortium)CNIH3 (select the gene name)
Genetic variants : HAPMAP149111
Genomic Variants (DGV)CNIH3 [DGVbeta]
DECIPHERCNIH3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNIH3 
Mutations
ICGC Data PortalCNIH3 
TCGA Data PortalCNIH3 
Broad Tumor PortalCNIH3
OASIS PortalCNIH3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNIH3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNIH3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNIH3
DgiDB (Drug Gene Interaction Database)CNIH3
DoCM (Curated mutations)CNIH3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNIH3 (select a term)
intoGenCNIH3
Cancer3DCNIH3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCNIH3
Genetic Testing Registry CNIH3
NextProtQ8TBE1 [Medical]
TSGene149111
GENETestsCNIH3
Target ValidationCNIH3
Huge Navigator CNIH3 [HugePedia]
snp3D : Map Gene to Disease149111
BioCentury BCIQCNIH3
ClinGenCNIH3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149111
Chemical/Pharm GKB GenePA134929862
Clinical trialCNIH3
Miscellaneous
canSAR (ICR)CNIH3 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNIH3
EVEXCNIH3
GoPubMedCNIH3
iHOPCNIH3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:02 CEST 2017

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