Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CNIH4 (cornichon family AMPA receptor auxiliary protein 4)

Identity

Alias_namescornichon homolog 4 (Drosophila)
Alias_symbol (synonym)HSPC163
Other aliasCNIH-4
HGNC (Hugo) CNIH4
LocusID (NCBI) 29097
Atlas_Id 61938
Location 1q42.11  [Link to chromosome band 1q42]
Location_base_pair Starts at 224544513 and ends at 224564586 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PAK1 (11q13.5) / CNIH4 (1q42.11)PTTG1IP (21q22.3) / CNIH4 (1q42.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNIH4   25013
Cards
Entrez_Gene (NCBI)CNIH4  29097  cornichon family AMPA receptor auxiliary protein 4
AliasesCNIH-4; HSPC163
GeneCards (Weizmann)CNIH4
Ensembl hg19 (Hinxton)ENSG00000143771 [Gene_View]  chr1:224544513-224564586 [Contig_View]  CNIH4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143771 [Gene_View]  chr1:224544513-224564586 [Contig_View]  CNIH4 [Vega]
ICGC DataPortalENSG00000143771
TCGA cBioPortalCNIH4
AceView (NCBI)CNIH4
Genatlas (Paris)CNIH4
WikiGenes29097
SOURCE (Princeton)CNIH4
Genetics Home Reference (NIH)CNIH4
Genomic and cartography
GoldenPath hg19 (UCSC)CNIH4  -     chr1:224544513-224564586 +  1q42.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CNIH4  -     1q42.11   [Description]    (hg38-Dec_2013)
EnsemblCNIH4 - 1q42.11 [CytoView hg19]  CNIH4 - 1q42.11 [CytoView hg38]
Mapping of homologs : NCBICNIH4 [Mapview hg19]  CNIH4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161512 AK024237 AK024569 AK222634 AK289973
RefSeq transcript (Entrez)NM_001277197 NM_001277198 NM_001277199 NM_001277200 NM_014184
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)CNIH4
Cluster EST : UnigeneHs.445890 [ NCBI ]
CGAP (NCI)Hs.445890
Alternative Splicing GalleryENSG00000143771
Gene ExpressionCNIH4 [ NCBI-GEO ]   CNIH4 [ EBI - ARRAY_EXPRESS ]   CNIH4 [ SEEK ]   CNIH4 [ MEM ]
Gene Expression Viewer (FireBrowse)CNIH4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29097
GTEX Portal (Tissue expression)CNIH4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P003   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P003  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P003
Splice isoforms : SwissVarQ9P003
PhosPhoSitePlusQ9P003
Domains : Interpro (EBI)Cornichon   
Domain families : Pfam (Sanger)Cornichon (PF03311)   
Domain families : Pfam (NCBI)pfam03311   
Conserved Domain (NCBI)CNIH4
DMDM Disease mutations29097
Blocks (Seattle)CNIH4
SuperfamilyQ9P003
Human Protein AtlasENSG00000143771
Peptide AtlasQ9P003
HPRD13709
IPIIPI00000115   IPI00057099   IPI00643607   IPI00642014   
Protein Interaction databases
DIP (DOE-UCLA)Q9P003
IntAct (EBI)Q9P003
FunCoupENSG00000143771
BioGRIDCNIH4
STRING (EMBL)CNIH4
ZODIACCNIH4
Ontologies - Pathways
QuickGOQ9P003
Ontology : AmiGOprotein binding  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  ER to Golgi vesicle-mediated transport  protein transport  integral component of membrane  CCR5 chemokine receptor binding  intracellular signal transduction  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  ER to Golgi vesicle-mediated transport  protein transport  integral component of membrane  CCR5 chemokine receptor binding  intracellular signal transduction  
NDEx NetworkCNIH4
Atlas of Cancer Signalling NetworkCNIH4
Wikipedia pathwaysCNIH4
Orthology - Evolution
OrthoDB29097
GeneTree (enSembl)ENSG00000143771
Phylogenetic Trees/Animal Genes : TreeFamCNIH4
HOVERGENQ9P003
HOGENOMQ9P003
Homologs : HomoloGeneCNIH4
Homology/Alignments : Family Browser (UCSC)CNIH4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNIH4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNIH4
dbVarCNIH4
ClinVarCNIH4
1000_GenomesCNIH4 
Exome Variant ServerCNIH4
ExAC (Exome Aggregation Consortium)CNIH4 (select the gene name)
Genetic variants : HAPMAP29097
Genomic Variants (DGV)CNIH4 [DGVbeta]
DECIPHER (Syndromes)1:224544513-224564586  ENSG00000143771
CONAN: Copy Number AnalysisCNIH4 
Mutations
ICGC Data PortalCNIH4 
TCGA Data PortalCNIH4 
Broad Tumor PortalCNIH4
OASIS PortalCNIH4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNIH4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNIH4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNIH4
DgiDB (Drug Gene Interaction Database)CNIH4
DoCM (Curated mutations)CNIH4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNIH4 (select a term)
intoGenCNIH4
Cancer3DCNIH4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCNIH4
Genetic Testing Registry CNIH4
NextProtQ9P003 [Medical]
TSGene29097
GENETestsCNIH4
Huge Navigator CNIH4 [HugePedia]
snp3D : Map Gene to Disease29097
BioCentury BCIQCNIH4
ClinGenCNIH4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29097
Chemical/Pharm GKB GenePA142672091
Clinical trialCNIH4
Miscellaneous
canSAR (ICR)CNIH4 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNIH4
EVEXCNIH4
GoPubMedCNIH4
iHOPCNIH4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:49 CET 2017

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