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CNMD (chondromodulin)

Identity

Other aliasBRICD3
CHM-I
CHM1
LECT1
MYETS1
HGNC (Hugo) CNMD
LocusID (NCBI) 11061
Atlas_Id 56636
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 52703266 and ends at 52739812 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNMD   17005
Cards
Entrez_Gene (NCBI)CNMD  11061  chondromodulin
AliasesBRICD3; CHM-I; CHM1; LECT1; 
MYETS1
GeneCards (Weizmann)CNMD
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:52703266-52739812 [Contig_View]  CNMD [Vega]
TCGA cBioPortalCNMD
AceView (NCBI)CNMD
Genatlas (Paris)CNMD
WikiGenes11061
SOURCE (Princeton)CNMD
Genetics Home Reference (NIH)CNMD
Genomic and cartography
GoldenPath hg38 (UCSC)CNMD  -     chr13:52703266-52739812 -  13q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNMD  -     13q14.3   [Description]    (hg19-Feb_2009)
EnsemblCNMD - 13q14.3 [CytoView hg19]  CNMD - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBICNMD [Mapview hg19]  CNMD [Mapview hg38]
OMIM605147   
Gene and transcription
Genbank (Entrez)AB005999 AB006000 AY368652 BC025659 CR541910
RefSeq transcript (Entrez)NM_001011705 NM_007015
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNMD
Cluster EST : UnigeneHs.421391 [ NCBI ]
CGAP (NCI)Hs.421391
Gene ExpressionCNMD [ NCBI-GEO ]   CNMD [ EBI - ARRAY_EXPRESS ]   CNMD [ SEEK ]   CNMD [ MEM ]
Gene Expression Viewer (FireBrowse)CNMD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11061
GTEX Portal (Tissue expression)CNMD
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75829   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75829  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75829
Splice isoforms : SwissVarO75829
PhosPhoSitePlusO75829
Domaine pattern : Prosite (Expaxy)BRICHOS (PS50869)   
Domains : Interpro (EBI)BRICHOS_dom   
Domain families : Pfam (Sanger)BRICHOS (PF04089)   
Domain families : Pfam (NCBI)pfam04089   
Domain families : Smart (EMBL)BRICHOS (SM01039)  
Conserved Domain (NCBI)CNMD
DMDM Disease mutations11061
Blocks (Seattle)CNMD
SuperfamilyO75829
Peptide AtlasO75829
IPIIPI00027162   IPI00429270   IPI00553085   IPI00514963   
Protein Interaction databases
DIP (DOE-UCLA)O75829
IntAct (EBI)O75829
BioGRIDCNMD
STRING (EMBL)CNMD
ZODIACCNMD
Ontologies - Pathways
QuickGOO75829
Ontology : AmiGOskeletal system development  proteinaceous extracellular matrix  proteoglycan metabolic process  endomembrane system  integral component of membrane  negative regulation of angiogenesis  cell differentiation  cartilage development  
Ontology : EGO-EBIskeletal system development  proteinaceous extracellular matrix  proteoglycan metabolic process  endomembrane system  integral component of membrane  negative regulation of angiogenesis  cell differentiation  cartilage development  
NDEx NetworkCNMD
Atlas of Cancer Signalling NetworkCNMD
Wikipedia pathwaysCNMD
Orthology - Evolution
OrthoDB11061
Phylogenetic Trees/Animal Genes : TreeFamCNMD
HOVERGENO75829
HOGENOMO75829
Homologs : HomoloGeneCNMD
Homology/Alignments : Family Browser (UCSC)CNMD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNMD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNMD
dbVarCNMD
ClinVarCNMD
1000_GenomesCNMD 
Exome Variant ServerCNMD
ExAC (Exome Aggregation Consortium)CNMD (select the gene name)
Genetic variants : HAPMAP11061
Genomic Variants (DGV)CNMD [DGVbeta]
DECIPHERCNMD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNMD 
Mutations
ICGC Data PortalCNMD 
TCGA Data PortalCNMD 
Broad Tumor PortalCNMD
OASIS PortalCNMD [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCNMD
BioMutasearch CNMD
DgiDB (Drug Gene Interaction Database)CNMD
DoCM (Curated mutations)CNMD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNMD (select a term)
intoGenCNMD
Cancer3DCNMD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605147   
Orphanet
MedgenCNMD
Genetic Testing Registry CNMD
NextProtO75829 [Medical]
TSGene11061
GENETestsCNMD
Target ValidationCNMD
Huge Navigator CNMD [HugePedia]
snp3D : Map Gene to Disease11061
BioCentury BCIQCNMD
ClinGenCNMD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11061
Chemical/Pharm GKB GenePA134897668
Clinical trialCNMD
Miscellaneous
canSAR (ICR)CNMD (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNMD
EVEXCNMD
GoPubMedCNMD
iHOPCNMD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:03:01 CEST 2017

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