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CNNM1 (cyclin and CBS domain divalent metal cation transport mediator 1)

Identity

Alias_namesACDP1
cyclin M1
Other aliasCLP-1
HGNC (Hugo) CNNM1
LocusID (NCBI) 26507
Atlas_Id 61942
Location 10q24.2  [Link to chromosome band 10q24]
Location_base_pair Starts at 99329099 and ends at 99394330 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNNM1   102
Cards
Entrez_Gene (NCBI)CNNM1  26507  cyclin and CBS domain divalent metal cation transport mediator 1
AliasesACDP1; CLP-1
GeneCards (Weizmann)CNNM1
Ensembl hg19 (Hinxton)ENSG00000119946 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119946 [Gene_View]  chr10:99329099-99394330 [Contig_View]  CNNM1 [Vega]
ICGC DataPortalENSG00000119946
TCGA cBioPortalCNNM1
AceView (NCBI)CNNM1
Genatlas (Paris)CNNM1
WikiGenes26507
SOURCE (Princeton)CNNM1
Genetics Home Reference (NIH)CNNM1
Genomic and cartography
GoldenPath hg38 (UCSC)CNNM1  -     chr10:99329099-99394330 +  10q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNNM1  -     10q24.2   [Description]    (hg19-Feb_2009)
EnsemblCNNM1 - 10q24.2 [CytoView hg19]  CNNM1 - 10q24.2 [CytoView hg38]
Mapping of homologs : NCBICNNM1 [Mapview hg19]  CNNM1 [Mapview hg38]
OMIM607802   
Gene and transcription
Genbank (Entrez)AF169226 AK056194 AK296545 AK299346 AK308326
RefSeq transcript (Entrez)NM_001345887 NM_001345888 NM_001345889 NM_020348
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNNM1
Cluster EST : UnigeneHs.274579 [ NCBI ]
CGAP (NCI)Hs.274579
Alternative Splicing GalleryENSG00000119946
Gene ExpressionCNNM1 [ NCBI-GEO ]   CNNM1 [ EBI - ARRAY_EXPRESS ]   CNNM1 [ SEEK ]   CNNM1 [ MEM ]
Gene Expression Viewer (FireBrowse)CNNM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26507
GTEX Portal (Tissue expression)CNNM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRU3
Splice isoforms : SwissVarQ9NRU3
PhosPhoSitePlusQ9NRU3
Domaine pattern : Prosite (Expaxy)CBS (PS51371)   
Domains : Interpro (EBI)CBS_dom    DUF21    RmlC-like_jellyroll   
Domain families : Pfam (Sanger)CBS (PF00571)    DUF21 (PF01595)   
Domain families : Pfam (NCBI)pfam00571    pfam01595   
Conserved Domain (NCBI)CNNM1
DMDM Disease mutations26507
Blocks (Seattle)CNNM1
SuperfamilyQ9NRU3
Human Protein AtlasENSG00000119946
Peptide AtlasQ9NRU3
HPRD07417
IPIIPI00006464   IPI00607728   IPI00916766   IPI01011834   IPI00970983   IPI00970949   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRU3
IntAct (EBI)Q9NRU3
FunCoupENSG00000119946
BioGRIDCNNM1
STRING (EMBL)CNNM1
ZODIACCNNM1
Ontologies - Pathways
QuickGOQ9NRU3
Ontology : AmiGOplasma membrane  ion transport  integral component of membrane  
Ontology : EGO-EBIplasma membrane  ion transport  integral component of membrane  
NDEx NetworkCNNM1
Atlas of Cancer Signalling NetworkCNNM1
Wikipedia pathwaysCNNM1
Orthology - Evolution
OrthoDB26507
GeneTree (enSembl)ENSG00000119946
Phylogenetic Trees/Animal Genes : TreeFamCNNM1
HOVERGENQ9NRU3
HOGENOMQ9NRU3
Homologs : HomoloGeneCNNM1
Homology/Alignments : Family Browser (UCSC)CNNM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNNM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNNM1
dbVarCNNM1
ClinVarCNNM1
1000_GenomesCNNM1 
Exome Variant ServerCNNM1
ExAC (Exome Aggregation Consortium)CNNM1 (select the gene name)
Genetic variants : HAPMAP26507
Genomic Variants (DGV)CNNM1 [DGVbeta]
DECIPHERCNNM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNNM1 
Mutations
ICGC Data PortalCNNM1 
TCGA Data PortalCNNM1 
Broad Tumor PortalCNNM1
OASIS PortalCNNM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNNM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNNM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNNM1
DgiDB (Drug Gene Interaction Database)CNNM1
DoCM (Curated mutations)CNNM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNNM1 (select a term)
intoGenCNNM1
Cancer3DCNNM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607802   
Orphanet
MedgenCNNM1
Genetic Testing Registry CNNM1
NextProtQ9NRU3 [Medical]
TSGene26507
GENETestsCNNM1
Huge Navigator CNNM1 [HugePedia]
snp3D : Map Gene to Disease26507
BioCentury BCIQCNNM1
ClinGenCNNM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26507
Chemical/Pharm GKB GenePA26668
Clinical trialCNNM1
Miscellaneous
canSAR (ICR)CNNM1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNNM1
EVEXCNNM1
GoPubMedCNNM1
iHOPCNNM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:06:22 CEST 2017

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