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CNNM3 (cyclin and CBS domain divalent metal cation transport mediator 3)

Identity

Alias_namesACDP3
cyclin M3
Other alias
HGNC (Hugo) CNNM3
LocusID (NCBI) 26505
Atlas_Id 54225
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 96816254 and ends at 96835384 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CNNM3 (2q11.2) / ANKRD23 (2q11.2)CNNM3 (2q11.2) / ARFGEF3 (6q23.3)CNNM3 (2q11.2) / CNNM3 (2q11.2)
SRRM1 (1p36.11) / CNNM3 (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNNM3   104
Cards
Entrez_Gene (NCBI)CNNM3  26505  cyclin and CBS domain divalent metal cation transport mediator 3
AliasesACDP3
GeneCards (Weizmann)CNNM3
Ensembl hg19 (Hinxton)ENSG00000168763 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168763 [Gene_View]  chr2:96816254-96835384 [Contig_View]  CNNM3 [Vega]
ICGC DataPortalENSG00000168763
TCGA cBioPortalCNNM3
AceView (NCBI)CNNM3
Genatlas (Paris)CNNM3
WikiGenes26505
SOURCE (Princeton)CNNM3
Genetics Home Reference (NIH)CNNM3
Genomic and cartography
GoldenPath hg38 (UCSC)CNNM3  -     chr2:96816254-96835384 +  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNNM3  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblCNNM3 - 2q11.2 [CytoView hg19]  CNNM3 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBICNNM3 [Mapview hg19]  CNNM3 [Mapview hg38]
OMIM607804   
Gene and transcription
Genbank (Entrez)AF216965 AK000025 AK126847 AK128698 BC007199
RefSeq transcript (Entrez)NM_017623 NM_199078
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNNM3
Cluster EST : UnigeneHs.711617 [ NCBI ]
CGAP (NCI)Hs.711617
Alternative Splicing GalleryENSG00000168763
Gene ExpressionCNNM3 [ NCBI-GEO ]   CNNM3 [ EBI - ARRAY_EXPRESS ]   CNNM3 [ SEEK ]   CNNM3 [ MEM ]
Gene Expression Viewer (FireBrowse)CNNM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26505
GTEX Portal (Tissue expression)CNNM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NE01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NE01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NE01
Splice isoforms : SwissVarQ8NE01
PhosPhoSitePlusQ8NE01
Domaine pattern : Prosite (Expaxy)CBS (PS51371)   
Domains : Interpro (EBI)CBS_dom   
Domain families : Pfam (Sanger)CBS (PF00571)   
Domain families : Pfam (NCBI)pfam00571   
Conserved Domain (NCBI)CNNM3
DMDM Disease mutations26505
Blocks (Seattle)CNNM3
PDB (SRS)5K22    5K23    5K25   
PDB (PDBSum)5K22    5K23    5K25   
PDB (IMB)5K22    5K23    5K25   
PDB (RSDB)5K22    5K23    5K25   
Structural Biology KnowledgeBase5K22    5K23    5K25   
SCOP (Structural Classification of Proteins)5K22    5K23    5K25   
CATH (Classification of proteins structures)5K22    5K23    5K25   
SuperfamilyQ8NE01
Human Protein AtlasENSG00000168763
Peptide AtlasQ8NE01
HPRD07419
IPIIPI00168565   IPI00386115   IPI00641658   IPI00470841   IPI00645934   
Protein Interaction databases
DIP (DOE-UCLA)Q8NE01
IntAct (EBI)Q8NE01
FunCoupENSG00000168763
BioGRIDCNNM3
STRING (EMBL)CNNM3
ZODIACCNNM3
Ontologies - Pathways
QuickGOQ8NE01
Ontology : AmiGOprotein binding  plasma membrane  ion transport  membrane  integral component of membrane  
Ontology : EGO-EBIprotein binding  plasma membrane  ion transport  membrane  integral component of membrane  
NDEx NetworkCNNM3
Atlas of Cancer Signalling NetworkCNNM3
Wikipedia pathwaysCNNM3
Orthology - Evolution
OrthoDB26505
GeneTree (enSembl)ENSG00000168763
Phylogenetic Trees/Animal Genes : TreeFamCNNM3
HOVERGENQ8NE01
HOGENOMQ8NE01
Homologs : HomoloGeneCNNM3
Homology/Alignments : Family Browser (UCSC)CNNM3
Gene fusions - Rearrangements
Fusion : MitelmanCNNM3/ANKRD23 [2q11.2/2q11.2]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNNM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNNM3
dbVarCNNM3
ClinVarCNNM3
1000_GenomesCNNM3 
Exome Variant ServerCNNM3
ExAC (Exome Aggregation Consortium)CNNM3 (select the gene name)
Genetic variants : HAPMAP26505
Genomic Variants (DGV)CNNM3 [DGVbeta]
DECIPHERCNNM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNNM3 
Mutations
ICGC Data PortalCNNM3 
TCGA Data PortalCNNM3 
Broad Tumor PortalCNNM3
OASIS PortalCNNM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNNM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNNM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNNM3
DgiDB (Drug Gene Interaction Database)CNNM3
DoCM (Curated mutations)CNNM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNNM3 (select a term)
intoGenCNNM3
Cancer3DCNNM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607804   
Orphanet
MedgenCNNM3
Genetic Testing Registry CNNM3
NextProtQ8NE01 [Medical]
TSGene26505
GENETestsCNNM3
Huge Navigator CNNM3 [HugePedia]
snp3D : Map Gene to Disease26505
BioCentury BCIQCNNM3
ClinGenCNNM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26505
Chemical/Pharm GKB GenePA26670
Clinical trialCNNM3
Miscellaneous
canSAR (ICR)CNNM3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNNM3
EVEXCNNM3
GoPubMedCNNM3
iHOPCNNM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:11:09 CEST 2017

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