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CNNM4 (cyclin and CBS domain divalent metal cation transport mediator 4)

Identity

Alias (NCBI)ACDP4
HGNC (Hugo) CNNM4
HGNC Alias symbKIAA1592
HGNC Previous nameACDP4
HGNC Previous namecyclin M4
LocusID (NCBI) 26504
Atlas_Id 55382
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 96760902 and ends at 96811873 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDKAL1 (6p22.3) / CNNM4 (2q11.2)CNNM4 (2q11.2) / LOC100507412 (-)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CNNM4   105
Cards
Entrez_Gene (NCBI)CNNM4    cyclin and CBS domain divalent metal cation transport mediator 4
AliasesACDP4
GeneCards (Weizmann)CNNM4
Ensembl hg19 (Hinxton)ENSG00000158158 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158158 [Gene_View]  ENSG00000158158 [Sequence]  chr2:96760902-96811873 [Contig_View]  CNNM4 [Vega]
ICGC DataPortalENSG00000158158
TCGA cBioPortalCNNM4
AceView (NCBI)CNNM4
Genatlas (Paris)CNNM4
SOURCE (Princeton)CNNM4
Genetics Home Reference (NIH)CNNM4
Genomic and cartography
GoldenPath hg38 (UCSC)CNNM4  -     chr2:96760902-96811873 +  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNNM4  -     2q11.2   [Description]    (hg19-Feb_2009)
GoldenPathCNNM4 - 2q11.2 [CytoView hg19]  CNNM4 - 2q11.2 [CytoView hg38]
ImmunoBaseENSG00000158158
genome Data Viewer NCBICNNM4 [Mapview hg19]  
OMIM217080   607805   
Gene and transcription
Genbank (Entrez)AB046812 AF202777 AK022833 AK095065 AK293915
RefSeq transcript (Entrez)NM_020184
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNNM4
Alternative Splicing GalleryENSG00000158158
Gene ExpressionCNNM4 [ NCBI-GEO ]   CNNM4 [ EBI - ARRAY_EXPRESS ]   CNNM4 [ SEEK ]   CNNM4 [ MEM ]
Gene Expression Viewer (FireBrowse)CNNM4 [ Firebrowse - Broad ]
GenevisibleExpression of CNNM4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26504
GTEX Portal (Tissue expression)CNNM4
Human Protein AtlasENSG00000158158-CNNM4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P4Q7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P4Q7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P4Q7
Splice isoforms : SwissVarQ6P4Q7
PhosPhoSitePlusQ6P4Q7
Domaine pattern : Prosite (Expaxy)CBS (PS51371)    CNMP_BINDING_3 (PS50042)    CNNM (PS51846)   
Domains : Interpro (EBI)CBS_dom    cNMP-bd-like    cNMP-bd_dom    CNNM   
Domain families : Pfam (Sanger)CBS (PF00571)    DUF21 (PF01595)   
Domain families : Pfam (NCBI)pfam00571    pfam01595   
Conserved Domain (NCBI)CNNM4
Blocks (Seattle)CNNM4
PDB (RSDB)6G52    6RS2   
PDB Europe6G52    6RS2   
PDB (PDBSum)6G52    6RS2   
PDB (IMB)6G52    6RS2   
Structural Biology KnowledgeBase6G52    6RS2   
SCOP (Structural Classification of Proteins)6G52    6RS2   
CATH (Classification of proteins structures)6G52    6RS2   
SuperfamilyQ6P4Q7
Human Protein Atlas [tissue]ENSG00000158158-CNNM4 [tissue]
Peptide AtlasQ6P4Q7
HPRD07420
IPIIPI00418426   IPI00922084   IPI00386063   
Protein Interaction databases
DIP (DOE-UCLA)Q6P4Q7
IntAct (EBI)Q6P4Q7
BioGRIDCNNM4
STRING (EMBL)CNNM4
ZODIACCNNM4
Ontologies - Pathways
QuickGOQ6P4Q7
Ontology : AmiGOprotein binding  plasma membrane  transport  visual perception  magnesium ion homeostasis  sodium ion transmembrane transporter activity  magnesium ion transmembrane transporter activity  magnesium ion transport  integral component of membrane  basolateral plasma membrane  transmembrane transporter activity  dendrite  protein-containing complex  sodium ion transmembrane transport  neuronal cell body  intracellular membrane-bounded organelle  response to stimulus  metal ion homeostasis  enamel mineralization  magnesium ion transmembrane transport  
Ontology : EGO-EBIprotein binding  plasma membrane  transport  visual perception  magnesium ion homeostasis  sodium ion transmembrane transporter activity  magnesium ion transmembrane transporter activity  magnesium ion transport  integral component of membrane  basolateral plasma membrane  transmembrane transporter activity  dendrite  protein-containing complex  sodium ion transmembrane transport  neuronal cell body  intracellular membrane-bounded organelle  response to stimulus  metal ion homeostasis  enamel mineralization  magnesium ion transmembrane transport  
NDEx NetworkCNNM4
Atlas of Cancer Signalling NetworkCNNM4
Wikipedia pathwaysCNNM4
Orthology - Evolution
OrthoDB26504
GeneTree (enSembl)ENSG00000158158
Phylogenetic Trees/Animal Genes : TreeFamCNNM4
HOGENOMQ6P4Q7
Homologs : HomoloGeneCNNM4
Homology/Alignments : Family Browser (UCSC)CNNM4
Gene fusions - Rearrangements
Fusion : QuiverCNNM4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNNM4 [hg38]
dbVarCNNM4
ClinVarCNNM4
MonarchCNNM4
1000_GenomesCNNM4 
Exome Variant ServerCNNM4
GNOMAD BrowserENSG00000158158
Varsome BrowserCNNM4
Genomic Variants (DGV)CNNM4 [DGVbeta]
DECIPHERCNNM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNNM4 
Mutations
ICGC Data PortalCNNM4 
TCGA Data PortalCNNM4 
Broad Tumor PortalCNNM4
OASIS PortalCNNM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNNM4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCNNM4
Mutations and Diseases : HGMDCNNM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch CNNM4
DgiDB (Drug Gene Interaction Database)CNNM4
DoCM (Curated mutations)CNNM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNNM4 (select a term)
intoGenCNNM4
Cancer3DCNNM4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM217080    607805   
Orphanet1844   
DisGeNETCNNM4
MedgenCNNM4
Genetic Testing Registry CNNM4
NextProtQ6P4Q7 [Medical]
GENETestsCNNM4
Target ValidationCNNM4
Huge Navigator CNNM4 [HugePedia]
ClinGenCNNM4
Clinical trials, drugs, therapy
MyCancerGenomeCNNM4
Protein Interactions : CTD
Pharm GKB GenePA26671
PharosQ6P4Q7
Clinical trialCNNM4
Miscellaneous
canSAR (ICR)CNNM4 (select the gene name)
HarmonizomeCNNM4
DataMed IndexCNNM4
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCNNM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:16:15 CET 2021

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