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CNNM4 (cyclin and CBS domain divalent metal cation transport mediator 4)

Identity

Alias_namesACDP4
cyclin M4
Alias_symbol (synonym)KIAA1592
Other alias
HGNC (Hugo) CNNM4
LocusID (NCBI) 26504
Atlas_Id 55382
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 97426639 and ends at 97477628 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDKAL1 (6p22.3) / CNNM4 (2q11.2)CNNM4 (2q11.2) / LOC100507412 (-)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNNM4   105
Cards
Entrez_Gene (NCBI)CNNM4  26504  cyclin and CBS domain divalent metal cation transport mediator 4
AliasesACDP4
GeneCards (Weizmann)CNNM4
Ensembl hg19 (Hinxton)ENSG00000158158 [Gene_View]  chr2:97426639-97477628 [Contig_View]  CNNM4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000158158 [Gene_View]  chr2:97426639-97477628 [Contig_View]  CNNM4 [Vega]
ICGC DataPortalENSG00000158158
TCGA cBioPortalCNNM4
AceView (NCBI)CNNM4
Genatlas (Paris)CNNM4
WikiGenes26504
SOURCE (Princeton)CNNM4
Genetics Home Reference (NIH)CNNM4
Genomic and cartography
GoldenPath hg19 (UCSC)CNNM4  -     chr2:97426639-97477628 +  2q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CNNM4  -     2q11.2   [Description]    (hg38-Dec_2013)
EnsemblCNNM4 - 2q11.2 [CytoView hg19]  CNNM4 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBICNNM4 [Mapview hg19]  CNNM4 [Mapview hg38]
OMIM217080   607805   
Gene and transcription
Genbank (Entrez)AB046812 AF202777 AK022833 AK095065 AK293915
RefSeq transcript (Entrez)NM_020184
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_016608 NT_005403 NW_004929303
Consensus coding sequences : CCDS (NCBI)CNNM4
Cluster EST : UnigeneHs.175043 [ NCBI ]
CGAP (NCI)Hs.175043
Alternative Splicing GalleryENSG00000158158
Gene ExpressionCNNM4 [ NCBI-GEO ]   CNNM4 [ EBI - ARRAY_EXPRESS ]   CNNM4 [ SEEK ]   CNNM4 [ MEM ]
Gene Expression Viewer (FireBrowse)CNNM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26504
GTEX Portal (Tissue expression)CNNM4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P4Q7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P4Q7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P4Q7
Splice isoforms : SwissVarQ6P4Q7
PhosPhoSitePlusQ6P4Q7
Domaine pattern : Prosite (Expaxy)CBS (PS51371)    CNMP_BINDING_3 (PS50042)   
Domains : Interpro (EBI)CBS_dom    cNMP-bd-like    cNMP-bd_dom    DUF21    RmlC-like_jellyroll   
Domain families : Pfam (Sanger)CBS (PF00571)    DUF21 (PF01595)   
Domain families : Pfam (NCBI)pfam00571    pfam01595   
Domain families : Smart (EMBL)cNMP (SM00100)  
Conserved Domain (NCBI)CNNM4
DMDM Disease mutations26504
Blocks (Seattle)CNNM4
PDB (SRS)4IY3   
PDB (PDBSum)4IY3   
PDB (IMB)4IY3   
PDB (RSDB)4IY3   
Structural Biology KnowledgeBase4IY3   
SCOP (Structural Classification of Proteins)4IY3   
CATH (Classification of proteins structures)4IY3   
SuperfamilyQ6P4Q7
Human Protein AtlasENSG00000158158
Peptide AtlasQ6P4Q7
HPRD07420
IPIIPI00418426   IPI00922084   IPI00386063   
Protein Interaction databases
DIP (DOE-UCLA)Q6P4Q7
IntAct (EBI)Q6P4Q7
FunCoupENSG00000158158
BioGRIDCNNM4
STRING (EMBL)CNNM4
ZODIACCNNM4
Ontologies - Pathways
QuickGOQ6P4Q7
Ontology : AmiGOvisual perception  magnesium ion homeostasis  sodium ion transmembrane transporter activity  magnesium ion transmembrane transporter activity  magnesium ion transport  integral component of membrane  basolateral plasma membrane  sodium ion transmembrane transport  response to stimulus  enamel mineralization  magnesium ion transmembrane transport  
Ontology : EGO-EBIvisual perception  magnesium ion homeostasis  sodium ion transmembrane transporter activity  magnesium ion transmembrane transporter activity  magnesium ion transport  integral component of membrane  basolateral plasma membrane  sodium ion transmembrane transport  response to stimulus  enamel mineralization  magnesium ion transmembrane transport  
NDEx NetworkCNNM4
Atlas of Cancer Signalling NetworkCNNM4
Wikipedia pathwaysCNNM4
Orthology - Evolution
OrthoDB26504
GeneTree (enSembl)ENSG00000158158
Phylogenetic Trees/Animal Genes : TreeFamCNNM4
HOVERGENQ6P4Q7
HOGENOMQ6P4Q7
Homologs : HomoloGeneCNNM4
Homology/Alignments : Family Browser (UCSC)CNNM4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNNM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNNM4
dbVarCNNM4
ClinVarCNNM4
1000_GenomesCNNM4 
Exome Variant ServerCNNM4
ExAC (Exome Aggregation Consortium)CNNM4 (select the gene name)
Genetic variants : HAPMAP26504
Genomic Variants (DGV)CNNM4 [DGVbeta]
DECIPHER (Syndromes)2:97426639-97477628  ENSG00000158158
CONAN: Copy Number AnalysisCNNM4 
Mutations
ICGC Data PortalCNNM4 
TCGA Data PortalCNNM4 
Broad Tumor PortalCNNM4
OASIS PortalCNNM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNNM4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNNM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch CNNM4
DgiDB (Drug Gene Interaction Database)CNNM4
DoCM (Curated mutations)CNNM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNNM4 (select a term)
intoGenCNNM4
Cancer3DCNNM4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM217080    607805   
Orphanet1844   
MedgenCNNM4
Genetic Testing Registry CNNM4
NextProtQ6P4Q7 [Medical]
TSGene26504
GENETestsCNNM4
Huge Navigator CNNM4 [HugePedia]
snp3D : Map Gene to Disease26504
BioCentury BCIQCNNM4
ClinGenCNNM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26504
Chemical/Pharm GKB GenePA26671
Clinical trialCNNM4
Miscellaneous
canSAR (ICR)CNNM4 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNNM4
EVEXCNNM4
GoPubMedCNNM4
iHOPCNNM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:01:03 CET 2017

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