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CNOT11 (CCR4-NOT transcription complex subunit 11)

Identity

Alias_namesC2orf29
chromosome 2 open reading frame 29
CCR4-NOT transcription complex, subunit 11
Alias_symbol (synonym)C40
Other alias
HGNC (Hugo) CNOT11
LocusID (NCBI) 55571
Atlas_Id 46804
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 101252883 and ends at 101270316 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNOT11   25217
Cards
Entrez_Gene (NCBI)CNOT11  55571  CCR4-NOT transcription complex subunit 11
AliasesC2orf29; C40
GeneCards (Weizmann)CNOT11
Ensembl hg19 (Hinxton)ENSG00000158435 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158435 [Gene_View]  chr2:101252883-101270316 [Contig_View]  CNOT11 [Vega]
ICGC DataPortalENSG00000158435
TCGA cBioPortalCNOT11
AceView (NCBI)CNOT11
Genatlas (Paris)CNOT11
WikiGenes55571
SOURCE (Princeton)CNOT11
Genetics Home Reference (NIH)CNOT11
Genomic and cartography
GoldenPath hg38 (UCSC)CNOT11  -     chr2:101252883-101270316 +  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNOT11  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblCNOT11 - 2q11.2 [CytoView hg19]  CNOT11 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBICNOT11 [Mapview hg19]  CNOT11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF103798 AK024221 BC018664 BC064421 BM923954
RefSeq transcript (Entrez)NM_017546
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNOT11
Cluster EST : UnigeneHs.744080 [ NCBI ]
CGAP (NCI)Hs.744080
Alternative Splicing GalleryENSG00000158435
Gene ExpressionCNOT11 [ NCBI-GEO ]   CNOT11 [ EBI - ARRAY_EXPRESS ]   CNOT11 [ SEEK ]   CNOT11 [ MEM ]
Gene Expression Viewer (FireBrowse)CNOT11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55571
GTEX Portal (Tissue expression)CNOT11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKZ1
Splice isoforms : SwissVarQ9UKZ1
PhosPhoSitePlusQ9UKZ1
Domains : Interpro (EBI)CNOT11   
Domain families : Pfam (Sanger)DUF2363 (PF10155)   
Domain families : Pfam (NCBI)pfam10155   
Conserved Domain (NCBI)CNOT11
DMDM Disease mutations55571
Blocks (Seattle)CNOT11
SuperfamilyQ9UKZ1
Human Protein AtlasENSG00000158435
Peptide AtlasQ9UKZ1
HPRD12812
IPIIPI00014194   IPI00916080   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKZ1
IntAct (EBI)Q9UKZ1
FunCoupENSG00000158435
BioGRIDCNOT11
STRING (EMBL)CNOT11
ZODIACCNOT11
Ontologies - Pathways
QuickGOQ9UKZ1
Ontology : AmiGOnuclear-transcribed mRNA poly(A) tail shortening  molecular_function  protein binding  nucleus  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of translation  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  cell proliferation  CCR4-NOT complex  gene silencing by RNA  
Ontology : EGO-EBInuclear-transcribed mRNA poly(A) tail shortening  molecular_function  protein binding  nucleus  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of translation  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  cell proliferation  CCR4-NOT complex  gene silencing by RNA  
NDEx NetworkCNOT11
Atlas of Cancer Signalling NetworkCNOT11
Wikipedia pathwaysCNOT11
Orthology - Evolution
OrthoDB55571
GeneTree (enSembl)ENSG00000158435
Phylogenetic Trees/Animal Genes : TreeFamCNOT11
HOVERGENQ9UKZ1
HOGENOMQ9UKZ1
Homologs : HomoloGeneCNOT11
Homology/Alignments : Family Browser (UCSC)CNOT11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNOT11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNOT11
dbVarCNOT11
ClinVarCNOT11
1000_GenomesCNOT11 
Exome Variant ServerCNOT11
ExAC (Exome Aggregation Consortium)CNOT11 (select the gene name)
Genetic variants : HAPMAP55571
Genomic Variants (DGV)CNOT11 [DGVbeta]
DECIPHERCNOT11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNOT11 
Mutations
ICGC Data PortalCNOT11 
TCGA Data PortalCNOT11 
Broad Tumor PortalCNOT11
OASIS PortalCNOT11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCNOT11
BioMutasearch CNOT11
DgiDB (Drug Gene Interaction Database)CNOT11
DoCM (Curated mutations)CNOT11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNOT11 (select a term)
intoGenCNOT11
Cancer3DCNOT11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCNOT11
Genetic Testing Registry CNOT11
NextProtQ9UKZ1 [Medical]
TSGene55571
GENETestsCNOT11
Target ValidationCNOT11
Huge Navigator CNOT11 [HugePedia]
snp3D : Map Gene to Disease55571
BioCentury BCIQCNOT11
ClinGenCNOT11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55571
Chemical/Pharm GKB GenePA134899354
Clinical trialCNOT11
Miscellaneous
canSAR (ICR)CNOT11 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNOT11
EVEXCNOT11
GoPubMedCNOT11
iHOPCNOT11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:58 CEST 2017

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