Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CNOT9 (CCR4-NOT transcription complex subunit 9)

Identity

Alias_namesRQCD1
rcd1 (required for cell differentiation, S.pombe) homolog 1
RCD1 required for cell differentiation1 homolog (S. pombe)
Alias_symbol (synonym)RCD1
RCD1
CT129
CAF40
Other aliasRCD-1
HGNC (Hugo) CNOT9
LocusID (NCBI) 9125
Atlas_Id 55699
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219433303 and ends at 219461158 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CNOT9   10445
Cards
Entrez_Gene (NCBI)CNOT9  9125  CCR4-NOT transcription complex subunit 9
AliasesCAF40; CT129; RCD-1; RCD1; 
RQCD1
GeneCards (Weizmann)CNOT9
Ensembl hg19 (Hinxton)ENSG00000144580 [Gene_View]  chr2:219433303-219461158 [Contig_View]  CNOT9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000144580 [Gene_View]  chr2:219433303-219461158 [Contig_View]  CNOT9 [Vega]
ICGC DataPortalENSG00000144580
TCGA cBioPortalCNOT9
AceView (NCBI)CNOT9
Genatlas (Paris)CNOT9
WikiGenes9125
SOURCE (Princeton)CNOT9
Genetics Home Reference (NIH)CNOT9
Genomic and cartography
GoldenPath hg19 (UCSC)CNOT9  -     chr2:219433303-219461158 +  2q35   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CNOT9  -     2q35   [Description]    (hg38-Dec_2013)
EnsemblCNOT9 - 2q35 [CytoView hg19]  CNOT9 - 2q35 [CytoView hg38]
Mapping of homologs : NCBICNOT9 [Mapview hg19]  CNOT9 [Mapview hg38]
OMIM612054   
Gene and transcription
Genbank (Entrez)AA806815 AB500892 AK293281 AK296037 AK316567
RefSeq transcript (Entrez)NM_001271634 NM_001271635 NM_005444
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)CNOT9
Cluster EST : UnigeneHs.148767 [ NCBI ]
CGAP (NCI)Hs.148767
Alternative Splicing GalleryENSG00000144580
Gene ExpressionCNOT9 [ NCBI-GEO ]   CNOT9 [ EBI - ARRAY_EXPRESS ]   CNOT9 [ SEEK ]   CNOT9 [ MEM ]
Gene Expression Viewer (FireBrowse)CNOT9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9125
GTEX Portal (Tissue expression)CNOT9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92600   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92600  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92600
Splice isoforms : SwissVarQ92600
PhosPhoSitePlusQ92600
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Rcd1/Caf40   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CNOT9
DMDM Disease mutations9125
Blocks (Seattle)CNOT9
PDB (SRS)2FV2    4CRU    4CRV    4CT6    4CT7   
PDB (PDBSum)2FV2    4CRU    4CRV    4CT6    4CT7   
PDB (IMB)2FV2    4CRU    4CRV    4CT6    4CT7   
PDB (RSDB)2FV2    4CRU    4CRV    4CT6    4CT7   
Structural Biology KnowledgeBase2FV2    4CRU    4CRV    4CT6    4CT7   
SCOP (Structural Classification of Proteins)2FV2    4CRU    4CRV    4CT6    4CT7   
CATH (Classification of proteins structures)2FV2    4CRU    4CRV    4CT6    4CT7   
SuperfamilyQ92600
Human Protein AtlasENSG00000144580
Peptide AtlasQ92600
HPRD08828
IPIIPI00023101   IPI00926472   IPI00922574   IPI00063902   IPI00925887   IPI00926084   
Protein Interaction databases
DIP (DOE-UCLA)Q92600
IntAct (EBI)Q92600
FunCoupENSG00000144580
BioGRIDCNOT9
STRING (EMBL)CNOT9
ZODIACCNOT9
Ontologies - Pathways
QuickGOQ92600
Ontology : AmiGOnuclear-transcribed mRNA poly(A) tail shortening  cytoplasmic mRNA processing body  cytoplasmic mRNA processing body  protein binding  nucleus  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  sex differentiation  membrane  negative regulation of translation  cytokine-mediated signaling pathway  protein domain specific binding  CCR4-NOT complex  CCR4-NOT core complex  gene silencing by RNA  negative regulation of intracellular estrogen receptor signaling pathway  protein homodimerization activity  positive regulation of ligand-dependent nuclear receptor transcription coactivator activity  
Ontology : EGO-EBInuclear-transcribed mRNA poly(A) tail shortening  cytoplasmic mRNA processing body  cytoplasmic mRNA processing body  protein binding  nucleus  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  sex differentiation  membrane  negative regulation of translation  cytokine-mediated signaling pathway  protein domain specific binding  CCR4-NOT complex  CCR4-NOT core complex  gene silencing by RNA  negative regulation of intracellular estrogen receptor signaling pathway  protein homodimerization activity  positive regulation of ligand-dependent nuclear receptor transcription coactivator activity  
NDEx NetworkCNOT9
Atlas of Cancer Signalling NetworkCNOT9
Wikipedia pathwaysCNOT9
Orthology - Evolution
OrthoDB9125
GeneTree (enSembl)ENSG00000144580
Phylogenetic Trees/Animal Genes : TreeFamCNOT9
HOVERGENQ92600
HOGENOMQ92600
Homologs : HomoloGeneCNOT9
Homology/Alignments : Family Browser (UCSC)CNOT9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNOT9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNOT9
dbVarCNOT9
ClinVarCNOT9
1000_GenomesCNOT9 
Exome Variant ServerCNOT9
ExAC (Exome Aggregation Consortium)CNOT9 (select the gene name)
Genetic variants : HAPMAP9125
Genomic Variants (DGV)CNOT9 [DGVbeta]
DECIPHER (Syndromes)2:219433303-219461158  ENSG00000144580
CONAN: Copy Number AnalysisCNOT9 
Mutations
ICGC Data PortalCNOT9 
TCGA Data PortalCNOT9 
Broad Tumor PortalCNOT9
OASIS PortalCNOT9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCNOT9
BioMutasearch CNOT9
DgiDB (Drug Gene Interaction Database)CNOT9
DoCM (Curated mutations)CNOT9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNOT9 (select a term)
intoGenCNOT9
Cancer3DCNOT9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612054   
Orphanet
MedgenCNOT9
Genetic Testing Registry CNOT9
NextProtQ92600 [Medical]
TSGene9125
GENETestsCNOT9
Huge Navigator CNOT9 [HugePedia]
snp3D : Map Gene to Disease9125
BioCentury BCIQCNOT9
ClinGenCNOT9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9125
Chemical/Pharm GKB GenePA34859
Clinical trialCNOT9
Miscellaneous
canSAR (ICR)CNOT9 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNOT9
EVEXCNOT9
GoPubMedCNOT9
iHOPCNOT9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:01:05 CET 2017

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