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CNPPD1 (cyclin Pas1/PHO80 domain containing 1)

Identity

Alias_namesC2orf24
chromosome 2 open reading frame 24
Alias_symbol (synonym)CGI-57
Other alias
HGNC (Hugo) CNPPD1
LocusID (NCBI) 27013
Atlas_Id 61950
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219171897 and ends at 219178106 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CNPPD1 (2q35) / CNPPD1 (2q35)CNPPD1 (2q35) / DHCR24 (1p32.3)CNPPD1 (2q35) / TGM2 (20q11.23)
NHEJ1 (2q35) / CNPPD1 (2q35)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNPPD1   25220
Cards
Entrez_Gene (NCBI)CNPPD1  27013  cyclin Pas1/PHO80 domain containing 1
AliasesC2orf24; CGI-57
GeneCards (Weizmann)CNPPD1
Ensembl hg19 (Hinxton)ENSG00000115649 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115649 [Gene_View]  chr2:219171897-219178106 [Contig_View]  CNPPD1 [Vega]
ICGC DataPortalENSG00000115649
TCGA cBioPortalCNPPD1
AceView (NCBI)CNPPD1
Genatlas (Paris)CNPPD1
WikiGenes27013
SOURCE (Princeton)CNPPD1
Genetics Home Reference (NIH)CNPPD1
Genomic and cartography
GoldenPath hg38 (UCSC)CNPPD1  -     chr2:219171897-219178106 -  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNPPD1  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblCNPPD1 - 2q35 [CytoView hg19]  CNPPD1 - 2q35 [CytoView hg38]
Mapping of homologs : NCBICNPPD1 [Mapview hg19]  CNPPD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF070638 AF151815 AK075274 AK311656 AK314975
RefSeq transcript (Entrez)NM_001321389 NM_001321390 NM_001321391 NM_015680
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNPPD1
Cluster EST : UnigeneHs.4973 [ NCBI ]
CGAP (NCI)Hs.4973
Alternative Splicing GalleryENSG00000115649
Gene ExpressionCNPPD1 [ NCBI-GEO ]   CNPPD1 [ EBI - ARRAY_EXPRESS ]   CNPPD1 [ SEEK ]   CNPPD1 [ MEM ]
Gene Expression Viewer (FireBrowse)CNPPD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27013
GTEX Portal (Tissue expression)CNPPD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BV87   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BV87  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BV87
Splice isoforms : SwissVarQ9BV87
PhosPhoSitePlusQ9BV87
Domains : Interpro (EBI)Cyclin_PHO80-like   
Domain families : Pfam (Sanger)Cyclin (PF08613)   
Domain families : Pfam (NCBI)pfam08613   
Conserved Domain (NCBI)CNPPD1
DMDM Disease mutations27013
Blocks (Seattle)CNPPD1
SuperfamilyQ9BV87
Human Protein AtlasENSG00000115649
Peptide AtlasQ9BV87
HPRD10780
IPIIPI00107065   IPI00917493   IPI00917629   
Protein Interaction databases
DIP (DOE-UCLA)Q9BV87
IntAct (EBI)Q9BV87
FunCoupENSG00000115649
BioGRIDCNPPD1
STRING (EMBL)CNPPD1
ZODIACCNPPD1
Ontologies - Pathways
QuickGOQ9BV87
Ontology : AmiGOregulation of cyclin-dependent protein serine/threonine kinase activity  integral component of membrane  protein kinase binding  
Ontology : EGO-EBIregulation of cyclin-dependent protein serine/threonine kinase activity  integral component of membrane  protein kinase binding  
NDEx NetworkCNPPD1
Atlas of Cancer Signalling NetworkCNPPD1
Wikipedia pathwaysCNPPD1
Orthology - Evolution
OrthoDB27013
GeneTree (enSembl)ENSG00000115649
Phylogenetic Trees/Animal Genes : TreeFamCNPPD1
HOVERGENQ9BV87
HOGENOMQ9BV87
Homologs : HomoloGeneCNPPD1
Homology/Alignments : Family Browser (UCSC)CNPPD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNPPD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNPPD1
dbVarCNPPD1
ClinVarCNPPD1
1000_GenomesCNPPD1 
Exome Variant ServerCNPPD1
ExAC (Exome Aggregation Consortium)CNPPD1 (select the gene name)
Genetic variants : HAPMAP27013
Genomic Variants (DGV)CNPPD1 [DGVbeta]
DECIPHERCNPPD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNPPD1 
Mutations
ICGC Data PortalCNPPD1 
TCGA Data PortalCNPPD1 
Broad Tumor PortalCNPPD1
OASIS PortalCNPPD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNPPD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNPPD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNPPD1
DgiDB (Drug Gene Interaction Database)CNPPD1
DoCM (Curated mutations)CNPPD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNPPD1 (select a term)
intoGenCNPPD1
Cancer3DCNPPD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCNPPD1
Genetic Testing Registry CNPPD1
NextProtQ9BV87 [Medical]
TSGene27013
GENETestsCNPPD1
Target ValidationCNPPD1
Huge Navigator CNPPD1 [HugePedia]
snp3D : Map Gene to Disease27013
BioCentury BCIQCNPPD1
ClinGenCNPPD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27013
Chemical/Pharm GKB GenePA134874121
Clinical trialCNPPD1
Miscellaneous
canSAR (ICR)CNPPD1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNPPD1
EVEXCNPPD1
GoPubMedCNPPD1
iHOPCNPPD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:03 CEST 2017

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