Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CNPY1 (canopy FGF signaling regulator 1)

Identity

Alias_namescanopy 1 homolog (zebrafish)
Other alias-
HGNC (Hugo) CNPY1
LocusID (NCBI) 285888
Atlas_Id 61951
Location 7q36.3  [Link to chromosome band 7q36]
Location_base_pair Starts at 155501258 and ends at 155533844 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNPY1   27786
Cards
Entrez_Gene (NCBI)CNPY1  285888  canopy FGF signaling regulator 1
Aliases
GeneCards (Weizmann)CNPY1
Ensembl hg19 (Hinxton)ENSG00000146910 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146910 [Gene_View]  chr7:155501258-155533844 [Contig_View]  CNPY1 [Vega]
ICGC DataPortalENSG00000146910
TCGA cBioPortalCNPY1
AceView (NCBI)CNPY1
Genatlas (Paris)CNPY1
WikiGenes285888
SOURCE (Princeton)CNPY1
Genetics Home Reference (NIH)CNPY1
Genomic and cartography
GoldenPath hg38 (UCSC)CNPY1  -     chr7:155501258-155533844 -  7q36.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNPY1  -     7q36.3   [Description]    (hg19-Feb_2009)
EnsemblCNPY1 - 7q36.3 [CytoView hg19]  CNPY1 - 7q36.3 [CytoView hg38]
Mapping of homologs : NCBICNPY1 [Mapview hg19]  CNPY1 [Mapview hg38]
OMIM612493   
Gene and transcription
Genbank (Entrez)AK094445 BC105732 BC105733 BC105734 BC107598
RefSeq transcript (Entrez)NM_001103176
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNPY1
Cluster EST : UnigeneHs.146751 [ NCBI ]
CGAP (NCI)Hs.146751
Alternative Splicing GalleryENSG00000146910
Gene ExpressionCNPY1 [ NCBI-GEO ]   CNPY1 [ EBI - ARRAY_EXPRESS ]   CNPY1 [ SEEK ]   CNPY1 [ MEM ]
Gene Expression Viewer (FireBrowse)CNPY1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285888
GTEX Portal (Tissue expression)CNPY1
Human Protein AtlasENSG00000146910-CNPY1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3B7I2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3B7I2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3B7I2
Splice isoforms : SwissVarQ3B7I2
PhosPhoSitePlusQ3B7I2
Domains : Interpro (EBI)DUF3456   
Domain families : Pfam (Sanger)DUF3456 (PF11938)   
Domain families : Pfam (NCBI)pfam11938   
Conserved Domain (NCBI)CNPY1
DMDM Disease mutations285888
Blocks (Seattle)CNPY1
SuperfamilyQ3B7I2
Human Protein Atlas [tissue]ENSG00000146910-CNPY1 [tissue]
Peptide AtlasQ3B7I2
IPIIPI00855710   
Protein Interaction databases
DIP (DOE-UCLA)Q3B7I2
IntAct (EBI)Q3B7I2
FunCoupENSG00000146910
BioGRIDCNPY1
STRING (EMBL)CNPY1
ZODIACCNPY1
Ontologies - Pathways
QuickGOQ3B7I2
Ontology : AmiGOendoplasmic reticulum  enzyme linked receptor protein signaling pathway  tissue development  
Ontology : EGO-EBIendoplasmic reticulum  enzyme linked receptor protein signaling pathway  tissue development  
NDEx NetworkCNPY1
Atlas of Cancer Signalling NetworkCNPY1
Wikipedia pathwaysCNPY1
Orthology - Evolution
OrthoDB285888
GeneTree (enSembl)ENSG00000146910
Phylogenetic Trees/Animal Genes : TreeFamCNPY1
HOVERGENQ3B7I2
HOGENOMQ3B7I2
Homologs : HomoloGeneCNPY1
Homology/Alignments : Family Browser (UCSC)CNPY1
Gene fusions - Rearrangements
Tumor Fusion PortalCNPY1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNPY1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNPY1
dbVarCNPY1
ClinVarCNPY1
1000_GenomesCNPY1 
Exome Variant ServerCNPY1
ExAC (Exome Aggregation Consortium)ENSG00000146910
GNOMAD BrowserENSG00000146910
Genetic variants : HAPMAP285888
Genomic Variants (DGV)CNPY1 [DGVbeta]
DECIPHERCNPY1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNPY1 
Mutations
ICGC Data PortalCNPY1 
TCGA Data PortalCNPY1 
Broad Tumor PortalCNPY1
OASIS PortalCNPY1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNPY1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNPY1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNPY1
DgiDB (Drug Gene Interaction Database)CNPY1
DoCM (Curated mutations)CNPY1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNPY1 (select a term)
intoGenCNPY1
Cancer3DCNPY1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612493   
Orphanet
DisGeNETCNPY1
MedgenCNPY1
Genetic Testing Registry CNPY1
NextProtQ3B7I2 [Medical]
TSGene285888
GENETestsCNPY1
Target ValidationCNPY1
Huge Navigator CNPY1 [HugePedia]
snp3D : Map Gene to Disease285888
BioCentury BCIQCNPY1
ClinGenCNPY1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285888
Chemical/Pharm GKB GenePA162382571
Clinical trialCNPY1
Miscellaneous
canSAR (ICR)CNPY1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNPY1
EVEXCNPY1
GoPubMedCNPY1
iHOPCNPY1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:15:52 CET 2017

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