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CNPY2 (canopy FGF signaling regulator 2)

Identity

Alias_namesTMEM4
transmembrane protein 4
canopy 2 homolog (zebrafish)
Alias_symbol (synonym)HP10390
ZSIG9
Cnpy2
Other aliasMSAP
HGNC (Hugo) CNPY2
LocusID (NCBI) 10330
Atlas_Id 55945
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 56314474 and ends at 56316348 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CNPY2 (12q13.3) / CNPY2 (12q13.3)CNPY2 (12q13.3) / CS (12q13.3)CNPY2 (12q13.3) / RPLP0 (12q24.23)
CNPY2 (12q13.3) / UBL5 (19p13.2)MRPL14 (6p21.1) / CNPY2 (12q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNPY2   13529
Cards
Entrez_Gene (NCBI)CNPY2  10330  canopy FGF signaling regulator 2
AliasesHP10390; MSAP; TMEM4; ZSIG9
GeneCards (Weizmann)CNPY2
Ensembl hg19 (Hinxton)ENSG00000257727 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257727 [Gene_View]  chr12:56314474-56316348 [Contig_View]  CNPY2 [Vega]
ICGC DataPortalENSG00000257727
TCGA cBioPortalCNPY2
AceView (NCBI)CNPY2
Genatlas (Paris)CNPY2
WikiGenes10330
SOURCE (Princeton)CNPY2
Genetics Home Reference (NIH)CNPY2
Genomic and cartography
GoldenPath hg38 (UCSC)CNPY2  -     chr12:56314474-56316348 -  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNPY2  -     12q13.3   [Description]    (hg19-Feb_2009)
EnsemblCNPY2 - 12q13.3 [CytoView hg19]  CNPY2 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBICNPY2 [Mapview hg19]  CNPY2 [Mapview hg38]
OMIM605861   
Gene and transcription
Genbank (Entrez)AA515271 AB015631 AF186113 AK312921 AW293214
RefSeq transcript (Entrez)NM_001190991 NM_014255
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNPY2
Cluster EST : UnigeneHs.8752 [ NCBI ]
CGAP (NCI)Hs.8752
Alternative Splicing GalleryENSG00000257727
Gene ExpressionCNPY2 [ NCBI-GEO ]   CNPY2 [ EBI - ARRAY_EXPRESS ]   CNPY2 [ SEEK ]   CNPY2 [ MEM ]
Gene Expression Viewer (FireBrowse)CNPY2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10330
GTEX Portal (Tissue expression)CNPY2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2B0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2B0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2B0
Splice isoforms : SwissVarQ9Y2B0
PhosPhoSitePlusQ9Y2B0
Domaine pattern : Prosite (Expaxy)ER_TARGET (PS00014)    SAP_B (PS50015)   
Domains : Interpro (EBI)DUF3456    SaposinB_dom   
Domain families : Pfam (Sanger)DUF3456 (PF11938)   
Domain families : Pfam (NCBI)pfam11938   
Conserved Domain (NCBI)CNPY2
DMDM Disease mutations10330
Blocks (Seattle)CNPY2
SuperfamilyQ9Y2B0
Human Protein AtlasENSG00000257727
Peptide AtlasQ9Y2B0
HPRD12056
IPIIPI00443909   IPI00383952   IPI01021968   IPI01022100   IPI01022242   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2B0
IntAct (EBI)Q9Y2B0
FunCoupENSG00000257727
BioGRIDCNPY2
STRING (EMBL)CNPY2
ZODIACCNPY2
Ontologies - Pathways
QuickGOQ9Y2B0
Ontology : AmiGOprotein binding  endoplasmic reticulum  integral component of plasma membrane  enzyme linked receptor protein signaling pathway  tissue development  negative regulation of gene expression  regulation of low-density lipoprotein particle clearance  positive regulation of low-density lipoprotein particle receptor biosynthetic process  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  integral component of plasma membrane  enzyme linked receptor protein signaling pathway  tissue development  negative regulation of gene expression  regulation of low-density lipoprotein particle clearance  positive regulation of low-density lipoprotein particle receptor biosynthetic process  
NDEx NetworkCNPY2
Atlas of Cancer Signalling NetworkCNPY2
Wikipedia pathwaysCNPY2
Orthology - Evolution
OrthoDB10330
GeneTree (enSembl)ENSG00000257727
Phylogenetic Trees/Animal Genes : TreeFamCNPY2
HOVERGENQ9Y2B0
HOGENOMQ9Y2B0
Homologs : HomoloGeneCNPY2
Homology/Alignments : Family Browser (UCSC)CNPY2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNPY2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNPY2
dbVarCNPY2
ClinVarCNPY2
1000_GenomesCNPY2 
Exome Variant ServerCNPY2
ExAC (Exome Aggregation Consortium)CNPY2 (select the gene name)
Genetic variants : HAPMAP10330
Genomic Variants (DGV)CNPY2 [DGVbeta]
DECIPHERCNPY2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNPY2 
Mutations
ICGC Data PortalCNPY2 
TCGA Data PortalCNPY2 
Broad Tumor PortalCNPY2
OASIS PortalCNPY2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNPY2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNPY2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNPY2
DgiDB (Drug Gene Interaction Database)CNPY2
DoCM (Curated mutations)CNPY2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNPY2 (select a term)
intoGenCNPY2
Cancer3DCNPY2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605861   
Orphanet
MedgenCNPY2
Genetic Testing Registry CNPY2
NextProtQ9Y2B0 [Medical]
TSGene10330
GENETestsCNPY2
Target ValidationCNPY2
Huge Navigator CNPY2 [HugePedia]
snp3D : Map Gene to Disease10330
BioCentury BCIQCNPY2
ClinGenCNPY2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10330
Chemical/Pharm GKB GenePA162382584
Clinical trialCNPY2
Miscellaneous
canSAR (ICR)CNPY2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNPY2
EVEXCNPY2
GoPubMedCNPY2
iHOPCNPY2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:29:00 CEST 2017

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